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Lag0000637 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000637
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr4:11837306..11837677
RNA-Seq ExpressionLag0000637
SyntenyLag0000637
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]4.4e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

KAA8518236.1 hypothetical protein F0562_015710 [Nyssa sinensis]2.0e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTEG--QPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +LR+  L  Y+DGT   P + ++ EG     Q+NP+Y+ W  +DQAL TL+N TLS TALS++IGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTEG--QPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]4.4e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]4.4e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]4.4e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

TrEMBL top hitse value%identityAlignment
A0A5J4ZHB6 Uncharacterized protein2.1e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

A0A5J4ZKU4 Retrotran_gag_3 domain-containing protein9.6e-2554.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTEG--QPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +LR+  L  Y+DGT   P + ++ EG     Q+NP+Y+ W  +DQAL TL+N TLS TALS++IGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTEG--QPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein2.1e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

A0A5J5B049 Retrotran_gag_3 domain-containing protein2.1e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

A0A5J5B4Y2 Retrotran_gag_3 domain-containing protein2.1e-2454.81Show/hide
Query:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS
        +P+ LL NICNL++  LDSSNYV W+FQIS +L++  L  Y+DGT   P + ++ E      Q+NPEY+ W  +DQAL TL+N TLS TALS+VIGY+TS
Subjt:  TPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTE--GQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVIGYNTS

Query:  KEAW
        +EAW
Subjt:  KEAW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCAACAACCTTCTGATCAAGCCCTAATCGGTGGTTCATCCATCAGTACACCAGTTTCGCTTCTCAAAAACATCTGCAATTTAGTATCCGTGTGGCTTGACTCCTC
CAACTATGTGCTATGGCGATTTCAGATTTCTCCACTTCTCAGATCACAAAAATTATTCAAGTATCTTGATGGCACAATCAAGGCGCCTGCAGAAACAATTCGCACTGAAG
GACAACCTGATCAGGTTAATCCTGAGTATGAAAAATGGTATGAGAAAGATCAAGCTCTCTTTACATTGATAAATGACACTTTATCGCCAACTGCCCTATCCTATGTGATC
GGCTATAATACCTCCAAAGAAGCCTGGGACTGCAGGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGCAACAACCTTCTGATCAAGCCCTAATCGGTGGTTCATCCATCAGTACACCAGTTTCGCTTCTCAAAAACATCTGCAATTTAGTATCCGTGTGGCTTGACTCCTC
CAACTATGTGCTATGGCGATTTCAGATTTCTCCACTTCTCAGATCACAAAAATTATTCAAGTATCTTGATGGCACAATCAAGGCGCCTGCAGAAACAATTCGCACTGAAG
GACAACCTGATCAGGTTAATCCTGAGTATGAAAAATGGTATGAGAAAGATCAAGCTCTCTTTACATTGATAAATGACACTTTATCGCCAACTGCCCTATCCTATGTGATC
GGCTATAATACCTCCAAAGAAGCCTGGGACTGCAGGGATTAA
Protein sequenceShow/hide protein sequence
MMQQPSDQALIGGSSISTPVSLLKNICNLVSVWLDSSNYVLWRFQISPLLRSQKLFKYLDGTIKAPAETIRTEGQPDQVNPEYEKWYEKDQALFTLINDTLSPTALSYVI
GYNTSKEAWDCRD