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Lag0000642 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000642
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:11927604..11928158
RNA-Seq ExpressionLag0000642
SyntenyLag0000642
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER41574.1 cellular nucleic acid-binding protein [Striga asiatica]2.6e-0439.39Show/hide
Query:  VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDVDQQFEEWMRA-TPILGGSNRNK
        V++ ++A+EV + + YE+LP+FCY  G++GHV +ECE  +    +  F  W++A T I G  NR +
Subjt:  VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDVDQQFEEWMRA-TPILGGSNRNK

KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]7.1e-1039.56Show/hide
Query:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEE-NDQPDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDD
        K+G  A+E W+ V+YEKLP+FCY  G+VGHV QEC+E  D  +  Q+F  W+R +      ++ + +++R   +  RGRG G   + F+ D
Subjt:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEE-NDQPDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDD

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]1.2e-0436.92Show/hide
Query:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDV---------DQQFEEWMRATPI
        K+  + +++WV   YE+LP FC+  G++GH  ++CEE D  D          DQ F  W+RA+P+
Subjt:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDV---------DQQFEEWMRATPI

TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]3.4e-0432.84Show/hide
Query:  VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEEND--QPDVDQQ---FEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDDWRGG
        +K+G   E   V + YE+LP+FC+  G++GH  +EC + D  +  +D Q   F  WMRATPI    +++KT+ I +       RGR  +  R  +    G
Subjt:  VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEEND--QPDVDQQ---FEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDDWRGG

Query:  RGSKDTWRGNDHP-KASNQAVTGESPKKSLESQN
         GS     GN  P K+ + +V+  + +K+  S+N
Subjt:  RGSKDTWRGNDHP-KASNQAVTGESPKKSLESQN

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.1e-0628.67Show/hide
Query:  SRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQ---PDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGR----GRGTDFQRFRDDWRGGRG
        S  +++W  + YEKLP+FCY+ GK+GH  +ECE+  +    +  +Q+ +W+RAT +    +  + +    G  +GRG     GRG      R DW   R 
Subjt:  SRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQ---PDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGR----GRGTDFQRFRDDWRGGRG

Query:  SKDTWRGNDHPKASNQAVTGESPKKSLESQNQELPTASKVSEKSKELAEK
          + WR  D P++S++    E   +     N+E  TA++++ +  ++  +
Subjt:  SKDTWRGNDHPKASNQAVTGESPKKSLESQNQELPTASKVSEKSKELAEK

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like5.7e-0536.92Show/hide
Query:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDV---------DQQFEEWMRATPI
        K+  + +++WV   YE+LP FC+  G++GH  ++CEE D  D          DQ F  W+RA+P+
Subjt:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDV---------DQQFEEWMRATPI

A0A392M948 Zinc CCHC-type-like protein (Fragment)1.6e-0435.38Show/hide
Query:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDV---------DQQFEEWMRATPI
        K+  + +++WV   YE+LP FC+  G++GH  ++CEE +  D          DQ F  W+RA+P+
Subjt:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDV---------DQQFEEWMRATPI

A0A5A7Q953 Cellular nucleic acid-binding protein1.3e-0439.39Show/hide
Query:  VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDVDQQFEEWMRA-TPILGGSNRNK
        V++ ++A+EV + + YE+LP+FCY  G++GHV +ECE  +    +  F  W++A T I G  NR +
Subjt:  VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDVDQQFEEWMRA-TPILGGSNRNK

A0A5D3C0K2 Reverse transcriptase3.4e-1039.56Show/hide
Query:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEE-NDQPDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDD
        K+G  A+E W+ V+YEKLP+FCY  G+VGHV QEC+E  D  +  Q+F  W+R +      ++ + +++R   +  RGRG G   + F+ D
Subjt:  KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEE-NDQPDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDD

A0A6J1D765 uncharacterized protein LOC1110179023.9e-0628.67Show/hide
Query:  SRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQ---PDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGR----GRGTDFQRFRDDWRGGRG
        S  +++W  + YEKLP+FCY+ GK+GH  +ECE+  +    +  +Q+ +W+RAT +    +  + +    G  +GRG     GRG      R DW   R 
Subjt:  SRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQ---PDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGR----GRGTDFQRFRDDWRGGRG

Query:  SKDTWRGNDHPKASNQAVTGESPKKSLESQNQELPTASKVSEKSKELAEK
          + WR  D P++S++    E   +     N+E  TA++++ +  ++  +
Subjt:  SKDTWRGNDHPKASNQAVTGESPKKSLESQNQELPTASKVSEKSKELAEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGATGGGATCACGAGCAGAGGAAGTGTGGGTTAAAGTTACCTATGAAAAGTTGCCTGAATTTTGTTACGACCGCGGGAAAGTTGGGCACGTGAAGCAAGAATG
CGAGGAAAATGATCAACCAGATGTAGACCAACAATTTGAGGAATGGATGAGGGCCACCCCTATCTTAGGTGGGTCGAATAGAAACAAAACCCAAGACATTAGAATGGGAC
CATCATGGGGGAGAGGAAGAGGAAGGGGAACCGATTTCCAAAGATTCAGAGACGATTGGAGAGGTGGAAGAGGAAGCAAGGATACATGGAGAGGAAATGATCATCCAAAA
GCTTCCAACCAAGCTGTCACCGGAGAAAGTCCGAAGAAAAGTCTCGAATCCCAAAACCAGGAGCTTCCAACGGCTAGTAAGGTGTCAGAGAAAAGTAAGGAATTAGCTGA
AAAAACAGGACCACCGTCAGGAAAACAGGGTACGACAAGTCAAATAATCAAGAAAAGTAACTCAAGAGAGATGATGGAAGTCAGCAAAGATAAAGGAATAAATATTAATT
CCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGATGGGATCACGAGCAGAGGAAGTGTGGGTTAAAGTTACCTATGAAAAGTTGCCTGAATTTTGTTACGACCGCGGGAAAGTTGGGCACGTGAAGCAAGAATG
CGAGGAAAATGATCAACCAGATGTAGACCAACAATTTGAGGAATGGATGAGGGCCACCCCTATCTTAGGTGGGTCGAATAGAAACAAAACCCAAGACATTAGAATGGGAC
CATCATGGGGGAGAGGAAGAGGAAGGGGAACCGATTTCCAAAGATTCAGAGACGATTGGAGAGGTGGAAGAGGAAGCAAGGATACATGGAGAGGAAATGATCATCCAAAA
GCTTCCAACCAAGCTGTCACCGGAGAAAGTCCGAAGAAAAGTCTCGAATCCCAAAACCAGGAGCTTCCAACGGCTAGTAAGGTGTCAGAGAAAAGTAAGGAATTAGCTGA
AAAAACAGGACCACCGTCAGGAAAACAGGGTACGACAAGTCAAATAATCAAGAAAAGTAACTCAAGAGAGATGATGGAAGTCAGCAAAGATAAAGGAATAAATATTAATT
CCTAG
Protein sequenceShow/hide protein sequence
MVKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDDWRGGRGSKDTWRGNDHPK
ASNQAVTGESPKKSLESQNQELPTASKVSEKSKELAEKTGPPSGKQGTTSQIIKKSNSREMMEVSKDKGININS