; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000660 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000660
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr4:12233582..12235364
RNA-Seq ExpressionLag0000660
SyntenyLag0000660
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-8533.45Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------
        MAFV  RQI +A LIANE +D W+   +RG VIKLD+EKAFDK++W F+D VL  K +   W                                      
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------

Query:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
                                                  D L+F       + NL  I+ +FE ASGLNIN  KS +  INV     +  S+   +G
Subjt:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
          KG  PT+YLG+PLGG P  ++FW  V+++IQ+KL NWKYS +SKGGR TLI++TL S+PIY +S+FK+P  +A+ ++   R+F W G++ +G   +LI
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC
          + N ++                                  LW+ L +  Y+    G +P      S  S WK +   I      I  ++ +G   SF 
Subjt:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC

Query:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS
         D W G  PL L+ PRL  LST    SV + WN  S  W L + R L + E   W N+   L   +        LW L+S+N F   S+   +  +  S 
Subjt:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS

Query:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN
         N   NL+  +WK ++PKK K F+W L HG INTADRLQ+++PN+  SP+W  MC  ++E   HLF HC ++ Q WS       WN
Subjt:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-8533.45Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------
        MAFV  RQI +A LIANE +D W+   +RG VIKLD+EKAFDK++W F+D +L  K +   W                                      
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------

Query:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
                                                  D L+F       + NL  I+ +FE ASGLNIN  KS +  INV        S+   +G
Subjt:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
          KG  PTTYLG+PLGG P  ++FW  ++++IQ+KL +WKYS +SKGGR TLI++TL S+PIY LS+FK+P  +A+ ++   R+F W G T +G   +LI
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC
          + N ++                                  LW+ L +  Y+    G +P +    S  S WK + + I      I  ++ +G   SF 
Subjt:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC

Query:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS
         D W G  PL L  PRL  LST    SV  +WN   K W++ + R L + E   W N+   L   +        LW L+S+N F   S+ +DL  ++ S 
Subjt:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS

Query:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN
         N   +L+  +WK  +PKK K F+W L HG INTADRLQ+++PN+  SP+W  MC  ++E   HLF HC ++ Q WS       WN
Subjt:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.2e-8633.96Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHDTL--------------------------------LF
        MAFV  RQI +A LIANE +D W+   +RG VIKLD+EKAFDK++W F+D +L  K +   W + +                                L 
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHDTL--------------------------------LF

Query:  STIDSFAMD-----------------------------------------------NLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
        S I   AMD                                               NL  I+ +FE ASGLNIN  KS +  INV        S+   +G
Subjt:  STIDSFAMD-----------------------------------------------NLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
          KG  PTTYLG+PLGG P  ++FW  ++++IQ+KL +WKYS +SKGGR TLI++TL S+PIY LS+FK+P  +A+ ++   R+F W G T +G   +LI
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC
          + N ++                                  LW+ L +  Y+    G +P +    S  S WK + + I      I  ++ +G   SF 
Subjt:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC

Query:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS
         D W G  PL L+ PRL  LST    SV  +WN   K W++ + R L + E   W N+   L   +        LW L+S+N F   S+ +DL  ++ S 
Subjt:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS

Query:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN
         N   +L+  +WK  +PKK K F+W L HG INTADRLQ+++PN+  SP+W  MC  ++E   HLF HC ++ Q WS       WN
Subjt:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-8032.87Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------
        +AFV NRQI DA L+ANE +D WK    +G ++KLD+EKAFD ++WDF+D VL+ K F  +W                                      
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------

Query:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
                                                  D LLF   + F ++NL   + +FE ASGL IN  KS L+ +NV  SE+      S +G
Subjt:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
              P +YLG+PLGGNPK   FW  V E+IQ+KL+NWKY+ ISKGGR TLI +TLSS+P Y LS+F+ PS   K+++K  R+F W+G+     +  + 
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRK-----------------PNSLI----LW----EALALYYNVVGC-------GGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDT
          K                  N  +    LW    E  AL+  ++ C       G  P  I   ++K+ W+ I   +D   S     L NG   SF    
Subjt:  GRK-----------------PNSLI----LW----EALALYYNVVGC-------GGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDT

Query:  WLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKS----LMEDLVHSNGS
        W     L  +YPRL  LS     +V   WN+    W +  RR LN+ E  +WA + ++L      +      W  DS N+F++ S    +   L  S+G 
Subjt:  WLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKS----LMEDLVHSNGS

Query:  SRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAF
         ++ L  IIWK   P KIK F+W L    INT + +Q +MPN    PSW V+C  + E   HLF HC      WS +  AF
Subjt:  SRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAF

RVW53692.1 putative ribonuclease H protein [Vitis vinifera]4.3e-8335.75Show/hide
Query:  AFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHD-------------------------------------
        AFV  RQILDA LIANE++D+ + S + GVV K+D EKA+D V WDFLD VL+ KGF   W                                       
Subjt:  AFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHD-------------------------------------

Query:  ---TLLFSTIDSFAM-----------DNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFGCKKGDWPTTYLGLPLGGNPKLTSFWQPVI
           TL+   +    M             L  ++ VF   SGL +N  KS + GIN+  + L    L     CK   WP  YLGLPLGGNPK+  FW PV+
Subjt:  ---TLLFSTIDSFAM-----------DNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFGCKKGDWPTTYLGLPLGGNPKLTSFWQPVI

Query:  ERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLIGRKPNSLILWEALALYYNVVGCGGWPKQI
        ERI  +L  W+ +Y+S GGR TLI + L+ +P Y+LSLFKMP+ VA  +++L RDF W G  G+G        K + L+ W+ +            PK I
Subjt:  ERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLIGRKPNSLILWEALALYYNVVGCGGWPKQI

Query:  -VGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWN-SESKAWDLGLRRNLNEEEIMEWANLSDLL
         V  S +  WK I           +  +GNG    F  D W G  PL   YPRL R+      S++ V   S    W+L  RRNL++ EI +   L   L
Subjt:  -VGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWN-SESKAWDLGLRRNLNEEEIMEWANLSDLL

Query:  SAVIIR-NVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSSRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIH
          + +  +V D+ LWPL SS  F+VKS    L  S+GSS+N     +W  Q P K+K F+W ++H  +NT D LQ + P    SP   ++C  + E   H
Subjt:  SAVIIR-NVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSSRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIH

Query:  LFAHCSFASQYWSIMLEAFGWNMVLPGNIIDLLALVF
        LF HCS     W  + +    + V P +I D++++ F
Subjt:  LFAHCSFASQYWSIMLEAFGWNMVLPGNIIDLLALVF

TrEMBL top hitse value%identityAlignment
A0A438F215 Putative ribonuclease H protein2.1e-8335.75Show/hide
Query:  AFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHD-------------------------------------
        AFV  RQILDA LIANE++D+ + S + GVV K+D EKA+D V WDFLD VL+ KGF   W                                       
Subjt:  AFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHD-------------------------------------

Query:  ---TLLFSTIDSFAM-----------DNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFGCKKGDWPTTYLGLPLGGNPKLTSFWQPVI
           TL+   +    M             L  ++ VF   SGL +N  KS + GIN+  + L    L     CK   WP  YLGLPLGGNPK+  FW PV+
Subjt:  ---TLLFSTIDSFAM-----------DNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFGCKKGDWPTTYLGLPLGGNPKLTSFWQPVI

Query:  ERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLIGRKPNSLILWEALALYYNVVGCGGWPKQI
        ERI  +L  W+ +Y+S GGR TLI + L+ +P Y+LSLFKMP+ VA  +++L RDF W G  G+G        K + L+ W+ +            PK I
Subjt:  ERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLIGRKPNSLILWEALALYYNVVGCGGWPKQI

Query:  -VGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWN-SESKAWDLGLRRNLNEEEIMEWANLSDLL
         V  S +  WK I           +  +GNG    F  D W G  PL   YPRL R+      S++ V   S    W+L  RRNL++ EI +   L   L
Subjt:  -VGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWN-SESKAWDLGLRRNLNEEEIMEWANLSDLL

Query:  SAVIIR-NVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSSRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIH
          + +  +V D+ LWPL SS  F+VKS    L  S+GSS+N     +W  Q P K+K F+W ++H  +NT D LQ + P    SP   ++C  + E   H
Subjt:  SAVIIR-NVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSSRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIH

Query:  LFAHCSFASQYWSIMLEAFGWNMVLPGNIIDLLALVF
        LF HCS     W  + +    + V P +I D++++ F
Subjt:  LFAHCSFASQYWSIMLEAFGWNMVLPGNIIDLLALVF

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein5.9e-8633.45Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------
        MAFV  RQI +A LIANE +D W+   +RG VIKLD+EKAFDK++W F+D VL  K +   W                                      
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------

Query:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
                                                  D L+F       + NL  I+ +FE ASGLNIN  KS +  INV     +  S+   +G
Subjt:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
          KG  PT+YLG+PLGG P  ++FW  V+++IQ+KL NWKYS +SKGGR TLI++TL S+PIY +S+FK+P  +A+ ++   R+F W G++ +G   +LI
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC
          + N ++                                  LW+ L +  Y+    G +P      S  S WK +   I      I  ++ +G   SF 
Subjt:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC

Query:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS
         D W G  PL L+ PRL  LST    SV + WN  S  W L + R L + E   W N+   L   +        LW L+S+N F   S+   +  +  S 
Subjt:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS

Query:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN
         N   NL+  +WK ++PKK K F+W L HG INTADRLQ+++PN+  SP+W  MC  ++E   HLF HC ++ Q WS       WN
Subjt:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.0e-8533.45Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------
        MAFV  RQI +A LIANE +D W+   +RG VIKLD+EKAFDK++W F+D +L  K +   W                                      
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------

Query:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
                                                  D L+F       + NL  I+ +FE ASGLNIN  KS +  INV        S+   +G
Subjt:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
          KG  PTTYLG+PLGG P  ++FW  ++++IQ+KL +WKYS +SKGGR TLI++TL S+PIY LS+FK+P  +A+ ++   R+F W G T +G   +LI
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC
          + N ++                                  LW+ L +  Y+    G +P +    S  S WK + + I      I  ++ +G   SF 
Subjt:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC

Query:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS
         D W G  PL L  PRL  LST    SV  +WN   K W++ + R L + E   W N+   L   +        LW L+S+N F   S+ +DL  ++ S 
Subjt:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS

Query:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN
         N   +L+  +WK  +PKK K F+W L HG INTADRLQ+++PN+  SP+W  MC  ++E   HLF HC ++ Q WS       WN
Subjt:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein2.0e-8633.96Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHDTL--------------------------------LF
        MAFV  RQI +A LIANE +D W+   +RG VIKLD+EKAFDK++W F+D +L  K +   W + +                                L 
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHDTL--------------------------------LF

Query:  STIDSFAMD-----------------------------------------------NLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
        S I   AMD                                               NL  I+ +FE ASGLNIN  KS +  INV        S+   +G
Subjt:  STIDSFAMD-----------------------------------------------NLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
          KG  PTTYLG+PLGG P  ++FW  ++++IQ+KL +WKYS +SKGGR TLI++TL S+PIY LS+FK+P  +A+ ++   R+F W G T +G   +LI
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC
          + N ++                                  LW+ L +  Y+    G +P +    S  S WK + + I      I  ++ +G   SF 
Subjt:  GRKPNSLI----------------------------------LWEALAL-YYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFC

Query:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS
         D W G  PL L+ PRL  LST    SV  +WN   K W++ + R L + E   W N+   L   +        LW L+S+N F   S+ +DL  ++ S 
Subjt:  NDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSS

Query:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN
         N   +L+  +WK  +PKK K F+W L HG INTADRLQ+++PN+  SP+W  MC  ++E   HLF HC ++ Q WS       WN
Subjt:  RN---NLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAFGWN

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein7.5e-8132.87Show/hide
Query:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------
        +AFV NRQI DA L+ANE +D WK    +G ++KLD+EKAFD ++WDF+D VL+ K F  +W                                      
Subjt:  MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWH-------------------------------------

Query:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG
                                                  D LLF   + F ++NL   + +FE ASGL IN  KS L+ +NV  SE+      S +G
Subjt:  ------------------------------------------DTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSELEVLSLTSKFG

Query:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI
              P +YLG+PLGGNPK   FW  V E+IQ+KL+NWKY+ ISKGGR TLI +TLSS+P Y LS+F+ PS   K+++K  R+F W+G+     +  + 
Subjt:  CKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI

Query:  GRK-----------------PNSLI----LW----EALALYYNVVGC-------GGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDT
          K                  N  +    LW    E  AL+  ++ C       G  P  I   ++K+ W+ I   +D   S     L NG   SF    
Subjt:  GRK-----------------PNSLI----LW----EALALYYNVVGC-------GGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDT

Query:  WLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKS----LMEDLVHSNGS
        W     L  +YPRL  LS     +V   WN+    W +  RR LN+ E  +WA + ++L      +      W  DS N+F++ S    +   L  S+G 
Subjt:  WLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLRRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKS----LMEDLVHSNGS

Query:  SRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAF
         ++ L  IIWK   P KIK F+W L    INT + +Q +MPN    PSW V+C  + E   HLF HC      WS +  AF
Subjt:  SRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYWSIMLEAF

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.1e-1723.5Show/hide
Query:  VIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI-------GRKPNSLILWEALALYYNVV
        ++ER+  ++  W+   +S  GR TL  A LSSMP++ +S   +P  +   LD+L R F W GST +     L+        +K   L +  A ++   ++
Subjt:  VIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTLI-------GRKPNSLILWEALALYYNVV

Query:  GCGGW---------------PKQIVG-----------GSTKSLWKFICSTI-DVVGSRIKKRLGNGMHTSFCNDTWLGIIPLKLSYPRLHRLSTRLTDSV
           GW                K  VG           GS  S W+ I   + DVV   +    G+G    F  D W+   PL L      R +   T   
Subjt:  GCGGW---------------PKQIVG-----------GSTKSLWKFICSTI-DVVGSRIKKRLGNGMHTSFCNDTWLGIIPLKLSYPRLHRLSTRLTDSV

Query:  AQVWNSESKAWDLGL--RRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSSRN--NLFSIIWKDQYPKKIKIFLWEL
          +W    + WD         N   +   A + DL     +   +D   W       F+V+S  E L        N  + F+ +WK + P+++K FLW +
Subjt:  AQVWNSESKAWDLGL--RRNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSSRN--NLFSIIWKDQYPKKIKIFLWEL

Query:  SHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYW
         +  + T +   R+   +  + +   +C    E  +H+   C      W
Subjt:  SHGGINTADRLQRKMPNYFHSPSWSVMCCLNEECQIHLFAHCSFASQYW

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases8.6e-0534.25Show/hide
Query:  AFVSNRQILDASLIANELIDDWKFSNKRGV----VIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHDTLLFST
        +F+  R   D  +   E +   +   K+GV    ++KLDLEKA+D++ WD+L+  L + GF  VW   +  ST
Subjt:  AFVSNRQILDASLIANELIDDWKFSNKRGV----VIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHDTLLFST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCGTATCTAATCGACAAATTTTGGATGCTTCATTGATTGCGAATGAATTGATTGATGACTGGAAATTCTCCAATAAGAGAGGTGTGGTTATTAAGTTGGATTT
GGAAAAGGCATTTGATAAAGTTGATTGGGATTTTCTGGATGCTGTCCTTCAGGCTAAAGGCTTTGGTTGTGTTTGGCATGATACTTTGTTATTCTCTACCATTGATTCTT
TTGCCATGGACAATCTTTTTGATATCATTAAAGTATTTGAACTTGCATCTGGTTTGAATATTAACTTTGGCAAAAGTGAACTATTAGGGATTAATGTTGGTGATTCAGAA
TTAGAAGTTTTAAGTTTAACTTCAAAGTTTGGCTGCAAAAAAGGAGATTGGCCAACAACCTATCTTGGTCTTCCCTTAGGTGGAAATCCTAAGTTAACATCATTTTGGCA
GCCAGTGATTGAGAGAATTCAACGCAAGCTTCACAATTGGAAGTATTCGTACATTTCAAAAGGTGGTAGGTACACTCTTATTCATGCGACTCTCTCGAGCATGCCTATTT
ATTACCTCTCTTTGTTTAAAATGCCATCTAAGGTAGCCAAATCTTTAGACAAGCTCATTCGAGACTTCTTTTGGGAAGGTTCCACAGGTGATGGGGCTTACACAACATTA
ATTGGGCGAAAACCCAACTCCCTCATATTATGGGAGGCCTTGGCATTGTATTATAATGTTGTTGGTTGTGGTGGGTGGCCAAAGCAAATTGTGGGAGGATCAACAAAATC
CCTTTGGAAGTTTATTTGTTCTACCATTGATGTTGTTGGTAGCCGTATAAAAAAACGGCTTGGAAACGGGATGCATACATCTTTTTGTAATGATACATGGCTAGGCATCA
TTCCTCTTAAATTATCATATCCTCGACTTCATCGGTTATCAACTAGACTTACAGATTCAGTTGCTCAAGTTTGGAATTCAGAATCTAAAGCATGGGATTTGGGCCTCCGT
CGAAATTTAAATGAGGAGGAGATTATGGAATGGGCCAATCTCTCAGATCTCCTATCTGCAGTCATCATTAGAAATGTTCAAGATTCTTGGTTATGGCCTCTTGACTCTTC
TAATGCTTTTACCGTCAAATCTCTGATGGAAGATTTAGTCCATTCAAATGGGTCATCTCGGAACAACCTATTCTCGATAATTTGGAAGGACCAATACCCAAAGAAGATCA
AAATTTTCTTATGGGAGCTTAGTCATGGTGGAATCAACACTGCTGATAGATTACAAAGAAAAATGCCTAATTATTTTCACTCCCCATCTTGGAGTGTTATGTGTTGTTTA
AACGAGGAATGCCAAATTCACCTCTTTGCTCACTGTTCCTTTGCTTCTCAGTATTGGTCTATTATGTTGGAAGCTTTTGGTTGGAATATGGTCTTGCCAGGAAATATTAT
TGATTTGCTAGCTTTAGTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCGTATCTAATCGACAAATTTTGGATGCTTCATTGATTGCGAATGAATTGATTGATGACTGGAAATTCTCCAATAAGAGAGGTGTGGTTATTAAGTTGGATTT
GGAAAAGGCATTTGATAAAGTTGATTGGGATTTTCTGGATGCTGTCCTTCAGGCTAAAGGCTTTGGTTGTGTTTGGCATGATACTTTGTTATTCTCTACCATTGATTCTT
TTGCCATGGACAATCTTTTTGATATCATTAAAGTATTTGAACTTGCATCTGGTTTGAATATTAACTTTGGCAAAAGTGAACTATTAGGGATTAATGTTGGTGATTCAGAA
TTAGAAGTTTTAAGTTTAACTTCAAAGTTTGGCTGCAAAAAAGGAGATTGGCCAACAACCTATCTTGGTCTTCCCTTAGGTGGAAATCCTAAGTTAACATCATTTTGGCA
GCCAGTGATTGAGAGAATTCAACGCAAGCTTCACAATTGGAAGTATTCGTACATTTCAAAAGGTGGTAGGTACACTCTTATTCATGCGACTCTCTCGAGCATGCCTATTT
ATTACCTCTCTTTGTTTAAAATGCCATCTAAGGTAGCCAAATCTTTAGACAAGCTCATTCGAGACTTCTTTTGGGAAGGTTCCACAGGTGATGGGGCTTACACAACATTA
ATTGGGCGAAAACCCAACTCCCTCATATTATGGGAGGCCTTGGCATTGTATTATAATGTTGTTGGTTGTGGTGGGTGGCCAAAGCAAATTGTGGGAGGATCAACAAAATC
CCTTTGGAAGTTTATTTGTTCTACCATTGATGTTGTTGGTAGCCGTATAAAAAAACGGCTTGGAAACGGGATGCATACATCTTTTTGTAATGATACATGGCTAGGCATCA
TTCCTCTTAAATTATCATATCCTCGACTTCATCGGTTATCAACTAGACTTACAGATTCAGTTGCTCAAGTTTGGAATTCAGAATCTAAAGCATGGGATTTGGGCCTCCGT
CGAAATTTAAATGAGGAGGAGATTATGGAATGGGCCAATCTCTCAGATCTCCTATCTGCAGTCATCATTAGAAATGTTCAAGATTCTTGGTTATGGCCTCTTGACTCTTC
TAATGCTTTTACCGTCAAATCTCTGATGGAAGATTTAGTCCATTCAAATGGGTCATCTCGGAACAACCTATTCTCGATAATTTGGAAGGACCAATACCCAAAGAAGATCA
AAATTTTCTTATGGGAGCTTAGTCATGGTGGAATCAACACTGCTGATAGATTACAAAGAAAAATGCCTAATTATTTTCACTCCCCATCTTGGAGTGTTATGTGTTGTTTA
AACGAGGAATGCCAAATTCACCTCTTTGCTCACTGTTCCTTTGCTTCTCAGTATTGGTCTATTATGTTGGAAGCTTTTGGTTGGAATATGGTCTTGCCAGGAAATATTAT
TGATTTGCTAGCTTTAGTTTTTTAG
Protein sequenceShow/hide protein sequence
MAFVSNRQILDASLIANELIDDWKFSNKRGVVIKLDLEKAFDKVDWDFLDAVLQAKGFGCVWHDTLLFSTIDSFAMDNLFDIIKVFELASGLNINFGKSELLGINVGDSE
LEVLSLTSKFGCKKGDWPTTYLGLPLGGNPKLTSFWQPVIERIQRKLHNWKYSYISKGGRYTLIHATLSSMPIYYLSLFKMPSKVAKSLDKLIRDFFWEGSTGDGAYTTL
IGRKPNSLILWEALALYYNVVGCGGWPKQIVGGSTKSLWKFICSTIDVVGSRIKKRLGNGMHTSFCNDTWLGIIPLKLSYPRLHRLSTRLTDSVAQVWNSESKAWDLGLR
RNLNEEEIMEWANLSDLLSAVIIRNVQDSWLWPLDSSNAFTVKSLMEDLVHSNGSSRNNLFSIIWKDQYPKKIKIFLWELSHGGINTADRLQRKMPNYFHSPSWSVMCCL
NEECQIHLFAHCSFASQYWSIMLEAFGWNMVLPGNIIDLLALVF