CuGenDBv2

Gene ID	Lag0000661
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	protein RIK isoform X1
Genome location	chr4:12235549..12236986
RNA-Seq Expression	Lag0000661
Synteny	Lag0000661
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR031121 - KH domain containing protein RIK/BLOM7

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581700.1 Protein RIK, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-46

88.98

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Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS VRVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

KAG7018181.1 Protein RIK [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-46

88.98

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Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS VRVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

XP_022955348.1 protein RIK isoform X1 [Cucurbita moschata]

1.2e-45

88.14

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Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS VRVS DE  AVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

XP_022955349.1 protein RIK isoform X2 [Cucurbita moschata]

1.2e-45

88.14

Show/hide

Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS VRVS DE  AVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

XP_023514658.1 protein RIK isoform X2 [Cucurbita pepo subsp. pepo]

2.0e-45

88.14

Show/hide

Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS VRVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M  LGGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GTP6 protein RIK isoform X1

5.7e-46

88.14

Show/hide

Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS VRVS DE  AVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

A0A6J1GW04 protein RIK isoform X2

5.7e-46

88.14

Show/hide

Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS VRVS DE  AVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

A0A6J1IRM9 protein RIK isoform X3

1.6e-45

87.29

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Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS  RVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQ KIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

A0A6J1ITV8 protein RIK isoform X2

1.6e-45

87.29

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Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS  RVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQ KIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

A0A6J1IWQ3 protein RIK isoform X1

1.6e-45

87.29

Show/hide

Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND
        MTEDS  RVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PLGGVAVASVAAL  VSSVNCAT+TQ KIQDELIAREISIND
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISIND

Query:  AEASIRYKLTKRQTQEEV
        AE S+RYKLTKRQTQEE+
Subjt:  AEASIRYKLTKRQTQEEV

SwissProt top hits

e value

%identity

Alignment

Q32SG5 Protein RIK

1.2e-13

39.86

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Query:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVP----------GILPSCTMMPLGGVAVASVAALVPV---------------S
        MTED   +V +DE  A     S  Q+  RKKRKWDQPAE  +S  +             G LP   +  +     A++ ++VPV               +
Subjt:  MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVP----------GILPSCTMMPLGGVAVASVAALVPV---------------S

Query:  SVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEV
        +     L+Q+KI DE+IAREI INDA+ S+RYKLTKRQTQEE+
Subjt:  SVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEV

Q9LIA4 Protein RIK

1.3e-15

40.35

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Query:  MTEDSDVRVSSDEHIAVPNIDSS-----SQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCAT--LTQSKIQDE-LI
        MTED+D          VP  DSS     S+T+ R+KRKWD+PAE  ++ G+A P +LP    M      V S++ L+   SV  A   + Q KIQDE +I
Subjt:  MTEDSDVRVSSDEHIAVPNIDSS-----SQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCAT--LTQSKIQDE-LI

Query:  AREISINDAEASIRYKLTKRQTQEEVSVFLRRETDISLI--------NEIMGNKIPIRNHYMKEVQLEIKE
        AREI INDAEAS+R++LTKR TQE++    +R T   +I        N     + P+  H     QL++KE
Subjt:  AREISINDAEASIRYKLTKRQTQEEVSVFLRRETDISLI--------NEIMGNKIPIRNHYMKEVQLEIKE

Arabidopsis top hits

e value

%identity

Alignment

AT3G29390.1 RS2-interacting KH protein

9.3e-17

40.35

Show/hide

Query:  MTEDSDVRVSSDEHIAVPNIDSS-----SQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCAT--LTQSKIQDE-LI
        MTED+D          VP  DSS     S+T+ R+KRKWD+PAE  ++ G+A P +LP    M      V S++ L+   SV  A   + Q KIQDE +I
Subjt:  MTEDSDVRVSSDEHIAVPNIDSS-----SQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCAT--LTQSKIQDE-LI

Query:  AREISINDAEASIRYKLTKRQTQEEVSVFLRRETDISLI--------NEIMGNKIPIRNHYMKEVQLEIKE
        AREI INDAEAS+R++LTKR TQE++    +R T   +I        N     + P+  H     QL++KE
Subjt:  AREISINDAEASIRYKLTKRQTQEEVSVFLRRETDISLI--------NEIMGNKIPIRNHYMKEVQLEIKE

Sequences

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CDS sequence

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ATGACGGAGGACAGTGACGTTAGGGTTTCTTCCGACGAACACATCGCAGTCCCCAACATTGATTCCTCTTCTCAAACAAAGCCAAGAAAGAAAAGAAAGTGGGATCAACC
TGCGGAGTCCTTTCTTTCTACTGGTATTGCAGTTCCAGGGATCCTCCCATCATGCACCATGATGCCCCTTGGTGGGGTTGCTGTCGCCAGTGTGGCGGCCCTGGTACCGG
TTTCTTCAGTGAACTGTGCAACCTTAACCCAGTCGAAGATTCAAGATGAGTTAATAGCAAGAGAAATATCAATAAATGATGCAGAGGCTTCTATTCGGTACAAGCTCACA
AAACGTCAGACACAGGAGGAGGTGAGTGTTTTTTTGAGAAGAGAAACAGACATTTCATTGATAAATGAAATAATGGGAAATAAAATTCCCATAAGGAATCATTACATGAA
AGAAGTCCAATTGGAGATCAAAGAAGATAGACTATAG

mRNA sequence

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Protein sequence

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MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISINDAEASIRYKLT
KRQTQEEVSVFLRRETDISLINEIMGNKIPIRNHYMKEVQLEIKEDRL

Lag0000661 (gene) of Sponge gourd (AG-4) v1 genome