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Lag0000665 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000665
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit E-like
Genome locationchr4:12294890..12295964
RNA-Seq ExpressionLag0000665
SyntenyLag0000665
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0003678 - DNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5560633.1 hypothetical protein RHGRI_003829 [Rhododendron griersonianum]2.1e-0435Show/hide
Query:  NSIVRQWKLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRFGSVLAYT
        NS      LTLWGD+A NEG  +E+   K P +  + VK+  Y G +S++TI  + + +DP++     +  RF   L  T
Subjt:  NSIVRQWKLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRFGSVLAYT
KAG5563555.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]4.6e-0435.62Show/hide
Query:  NSIVRQWKLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRF
        NS      LTLWGD+A NEG  +E+   K P +  + VK+  Y G +S++TI  + + +DP++     +  RF
Subjt:  NSIVRQWKLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRF
KAG5563556.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]4.6e-0435.62Show/hide
Query:  NSIVRQWKLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRF
        NS      LTLWGD+A NEG  +E+   K P +  + VK+  Y G +S++TI  + + +DP++     +  RF
Subjt:  NSIVRQWKLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRF
XP_008454685.1 PREDICTED: ATP-dependent DNA helicase PIF1-like [Cucumis melo]7.6e-0783.78Show/hide
Query:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYE
        KLTLWGDLAENEG +IEE    NPTIVATNVKVEIYE
Subjt:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYE
XP_022155232.1 replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]3.2e-0546.15Show/hide
Query:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTR
        KLTLW DLAENEG  +EE  K    I+ TNV+   +EGEVS+++   S++ I+P L+  + L  R
Subjt:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTR
TrEMBL top hitse value%identityAlignment
A0A1S3BZY9 ATP-dependent DNA helicase3.7e-0783.78Show/hide
Query:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYE
        KLTLWGDLAENEG +IEE    NPTIVATNVKVEIYE
Subjt:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYE
A0A6J1DNS8 replication protein A 70 kDa DNA-binding subunit E-like1.6e-0546.15Show/hide
Query:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTR
        KLTLW DLAENEG  +EE  K    I+ TNV+   +EGEVS+++   S++ I+P L+  + L  R
Subjt:  KLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G61000.1 Replication factor-A protein 1-related4.9e-0435.82Show/hide
Query:  LTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRFGS
        ++LW DLA   G ++ +   ++P I   ++KV  ++G VSL+TI  S ++I+P    AK+L + F S
Subjt:  LTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRFGS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATTCCATTGTGCGACAATGGAAATTGACATTATGGGGTGATTTAGCAGAAAATGAAGGTTTACAAATTGAAGAAGGCACTAAAAAGAATCCTACCATTGTTGC
AACCAATGTTAAAGTTGAGATTTATGAAGGGGAAGTGAGTTTGACAACAATTATGACCAGTATTATTCTCATTGATCCAAACCTTTCTAATGCAAAGGAGCTAGATACTA
GGTTCGGTTCGGTCCTTGCATATACATTACCCGAACTGAATGCACGCCTAGGGTTCCATTCGGATTTATATATTCACCTCTTCTCTCCTCCTTTCCCGCAGTTCACCTCT
TCAGCTCCTAGGGTTCCGTTTCGTCACCTCGCCTCTTACGTTTCGTCACCTCGCCTCTTCTCTTCTCTCGTGCCTCACCTCGTCTCTCCTGTAGTTCGCCTCTTCAGCTC
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAATTCCATTGTGCGACAATGGAAATTGACATTATGGGGTGATTTAGCAGAAAATGAAGGTTTACAAATTGAAGAAGGCACTAAAAAGAATCCTACCATTGTTGC
AACCAATGTTAAAGTTGAGATTTATGAAGGGGAAGTGAGTTTGACAACAATTATGACCAGTATTATTCTCATTGATCCAAACCTTTCTAATGCAAAGGAGCTAGATACTA
GGTTCGGTTCGGTCCTTGCATATACATTACCCGAACTGAATGCACGCCTAGGGTTCCATTCGGATTTATATATTCACCTCTTCTCTCCTCCTTTCCCGCAGTTCACCTCT
TCAGCTCCTAGGGTTCCGTTTCGTCACCTCGCCTCTTACGTTTCGTCACCTCGCCTCTTCTCTTCTCTCGTGCCTCACCTCGTCTCTCCTGTAGTTCGCCTCTTCAGCTC
TTAG
Protein sequenceShow/hide protein sequence
MKNSIVRQWKLTLWGDLAENEGLQIEEGTKKNPTIVATNVKVEIYEGEVSLTTIMTSIILIDPNLSNAKELDTRFGSVLAYTLPELNARLGFHSDLYIHLFSPPFPQFTS
SAPRVPFRHLASYVSSPRLFSSLVPHLVSPVVRLFSS