CuGenDBv2

Gene ID	Lag0000677
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	FRIGIDA-like protein
Genome location	chr4:12575564..12578014
RNA-Seq Expression	Lag0000677
Synteny	Lag0000677
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009908 - flower development (biological process) GO:0030154 - cell differentiation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR006846 - Ribosomal protein S30 IPR012474 - Frigida-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040796.1 FRIGIDA-like protein 4a [Cucumis melo var. makuwa]

1.1e-36

91.21

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNN GRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

XP_022959492.1 FRIGIDA-like protein 4a [Cucurbita moschata]

3.8e-37

92.31

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Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

XP_023006153.1 FRIGIDA-like protein 4a [Cucurbita maxima]

3.8e-37

92.31

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Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

XP_023548129.1 FRIGIDA-like protein 4a [Cucurbita pepo subsp. pepo]

3.8e-37

92.31

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

XP_038874267.1 FRIGIDA-like protein 4a [Benincasa hispida]

3.8e-37

92.31

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K5L7 FRIGIDA-like protein

5.3e-37

91.21

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNN GRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

A0A5A7TFJ5 FRIGIDA-like protein

5.3e-37

91.21

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNN GRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

A0A6J1C9V1 FRIGIDA-like protein

6.9e-37

91.21

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQ EFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

A0A6J1H4P3 FRIGIDA-like protein

1.8e-37

92.31

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

A0A6J1L451 FRIGIDA-like protein

1.8e-37

92.31

Show/hide

Query:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        +  DMIEE ISRGQQLDAVHFTYEVGLADKF  VPLLKAYLKDAKKAA AISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
Subjt:  VTADMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

SwissProt top hits

e value

%identity

Alignment

P49689 40S ribosomal protein S30

1.0e-13

86.36

Show/hide

Query:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA
        ++GSLARAGKVRGQTPKVAKQDKKKKPRG AHKR+Q++RRFVTA
Subjt:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA

P62866 40S ribosomal protein S30

1.2e-09

76.19

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Query:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFV
        ++GSLARAGKVRGQTPKVAKQ+KKKK  G A +R+QY+RRFV
Subjt:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFV

Q940H8 FRIGIDA-like protein 4b

1.6e-30

Show/hide

Query:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        DMIEE I RGQQLDAVHFT+EVGL   F  VPLLKAYL+DAKKA   I++D NN+GR+ HL ARKEQSALRAV+KCIEEYKL+ EFPP
Subjt:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

Q9FFF1 FRIGIDA-like protein 1

6.9e-10

36.47

Show/hide

Query:  MIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEF
        +I+  +  G+ + AV F YE G+ D+F  +P+LK+Y+KD ++AA  +  + N + ++ + A+ KE SAL+ +IK I++  L++EF
Subjt:  MIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEF

Q9LUV4 FRIGIDA-like protein 4a

4.5e-33

79.55

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Query:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        DMIEE ISRGQQLDAVHFTYEVGL DKF  VPLLKAYL+DAKK+A +I ED +N GRA HL ARKEQSAL+AV+KCIEEYKL+ EFPP
Subjt:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

Arabidopsis top hits

e value

%identity

Alignment

AT2G19750.1 Ribosomal protein S30 family protein

7.4e-15

86.36

Show/hide

Query:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA
        ++GSLARAGKVRGQTPKVAKQDKKKKPRG AHKR+Q++RRFVTA
Subjt:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA

AT3G22440.1 FRIGIDA-like protein

3.2e-34

79.55

Show/hide

Query:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        DMIEE ISRGQQLDAVHFTYEVGL DKF  VPLLKAYL+DAKK+A +I ED +N GRA HL ARKEQSAL+AV+KCIEEYKL+ EFPP
Subjt:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

AT4G14900.1 FRIGIDA-like protein

1.1e-31

Show/hide

Query:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP
        DMIEE I RGQQLDAVHFT+EVGL   F  VPLLKAYL+DAKKA   I++D NN+GR+ HL ARKEQSALRAV+KCIEEYKL+ EFPP
Subjt:  DMIEEFISRGQQLDAVHFTYEVGLADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

AT4G29390.1 Ribosomal protein S30 family protein

7.4e-15

86.36

Show/hide

Query:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA
        ++GSLARAGKVRGQTPKVAKQDKKKKPRG AHKR+Q++RRFVTA
Subjt:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA

AT5G56670.1 Ribosomal protein S30 family protein

7.4e-15

86.36

Show/hide

Query:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA
        ++GSLARAGKVRGQTPKVAKQDKKKKPRG AHKR+Q++RRFVTA
Subjt:  INGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTA

Sequences

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CDS sequence

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ATGTCGAGACGTCGTGGCCAGAGTCTCAATGCCGAGGTGATTTTGCCGGTCCTTCAAATCCGAAGCGTCGAGACGCTGTGGGGTGGCGTTGAGACGCCTCCTCTCGGCGG
CTCGAAGGTGCTACTGATTAACGGATCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAAGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGATGTGCCC
ACAAACGGATCCAATACAGCCGCAGATTCGTCACTGCTGATATGATTGAAGAATTTATCAGCCGAGGACAGCAGCTTGATGCAGTACATTTTACTTATGAAGTTGGTCTT
GCAGATAAATTCCTCCATGTTCCACTGCTGAAAGCTTATCTCAAGGATGCAAAGAAAGCTGCAACTGCTATTTCAGAGGACCCGAATAATGCTGGCAGAGCAATGCACCT
CGCTGCAAGGAAAGAGCAGTCTGCACTCCGAGCTGTAATCAAGTGCATTGAAGAATACAAGCTTCAGGCTGAGTTCCCTCCATAA

mRNA sequence

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Protein sequence

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MSRRRGQSLNAEVILPVLQIRSVETLWGGVETPPLGGSKVLLINGSLARAGKVRGQTPKVAKQDKKKKPRGCAHKRIQYSRRFVTADMIEEFISRGQQLDAVHFTYEVGL
ADKFLHVPLLKAYLKDAKKAATAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPP

Lag0000677 (gene) of Sponge gourd (AG-4) v1 genome