; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000680 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000680
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:12617245..12620619
RNA-Seq ExpressionLag0000680
SyntenyLag0000680
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33758.1 retrotransposon protein putative ty3-gypsy sub-class, partial [Cucumis melo subsp. melo]2.8e-3863.76Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT    + K 
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS

Query:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
           EKRQ  G     TLKERQ+KIY FPD+D+PDML+QLLE QLI+LP+
Subjt:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

KAA0025450.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-3864.43Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS+VEMC QGMHW+LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  ----KRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
            KRQ  G     TLKERQ+KIY F D+D+PDML+QLLE QLI+LP+
Subjt:  ----KRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.8e-3863.09Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT    + K 
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS

Query:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
           EKRQ  G     TLKERQ+K+Y FPD+D+PDML+QLLE QLI+LP+
Subjt:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]6.3e-3863.76Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR----QTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
        K+    Q  G     TLKERQ+K+Y FPD+D+PDML+QLLE QLI+LP+
Subjt:  KR----QTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]2.8e-3863.09Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT    + K 
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS

Query:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
           EKRQ  G     TLKERQ+K+Y FPD+D+PDML+QLLE QLI+LP+
Subjt:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H1.4e-3863.09Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT    + K 
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS

Query:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
           EKRQ  G     TLKERQ+K+Y FPD+D+PDML+QLLE QLI+LP+
Subjt:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

A0A5A7VE63 Uncharacterized protein3.1e-3863.76Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR----QTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
        K+    Q  G     TLKERQ+K+Y FPD+D+PDML+QLLE QLI+LP+
Subjt:  KR----QTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

A0A5D3BIH8 Uncharacterized protein1.4e-3863.09Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT    + K 
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS

Query:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
           EKRQ  G     TLKERQ+K+Y FPD+D+PDML+QLLE QLI+LP+
Subjt:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

A0A5D3C0N7 Ty3-gypsy retrotransposon protein4.0e-3864.43Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS+VEMC QGMHW+LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  ----KRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
            KRQ  G     TLKERQ+KIY F D+D+PDML+QLLE QLI+LP+
Subjt:  ----KRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

E5GBB6 Retrotransposon protein putative ty3-gypsy sub-class (Fragment)1.4e-3863.76Show/hide
Query:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS
        +SLDCKDRL ELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAHDMELSIA+R N DLL+P VR E +  + T        +E+MVV+TT    + K 
Subjt:  MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEET-------IEESMVVNTT----LPKS

Query:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK
           EKRQ  G     TLKERQ+KIY FPD+D+PDML+QLLE QLI+LP+
Subjt:  SSKEKRQTNG-AHHLTLKERQKKIYHFPDADIPDMLEQLLEAQLIELPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCTAGATTGCAAAGATCGTCTCATTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGAAACTCCTTTACATCCTTAAAGGTATAAAGCCTCGCAC
CTTTGAGGAGCTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAATGTGAGGAATGAAGGAAGGAACGACGAAG
AGACTATAGAAGAATCCATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAGCGACAAACAAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAGAAG
AAAATCTATCATTTCCCTGATGCCGACATCCCTGATATGCTGGAACAATTACTGGAAGCACAACTGATAGAGCTTCCTAAGTTTCCTTCTCTCCAAGTTCGAGGGTCCTT
ACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCAAAGGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTTGAGGTTCTTAGTTGTACGACTGCTAC
GTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCATTGTTGCATTTGTTCCCTCTTCTCTCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCC
TCCAAGTGCGAAGGATCTTATGTGGTGCATTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGG
TTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCAAGCACTTCGCTGCATTTCCTTCTCCCAAATTCGAACGTTCCCACGCAGTTCATTCCTCCAAG
TTCGAAGGTTTTCCGCTACTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACATCACTTCGTTGCAGTTCCCCTTCCTCCAAGTTCGAAGGTGTTCTCACGCGCTTGCT
GCAGTTCCTTCCTCCAAGTTCGTGGGTGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTCGAGGGTTCTCACGTTTCACACGTCGCTTCGCTGCGTTCCCTTC
CTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAAGCCTCACGTTTGAACCCGCTTCGCTGCAGTTTCTTCCTCCAAGTTCGAAGGTTCTCACGTT
TCACACGTCGCCTTCGCTGCAGTTCCTTCCTCAAAAGTTCAAAGGTTCGGAGGTTCTCACGCGTTCCTTCCTCAAAGTTCAAAGGTTCGGAGGTTCTCACGCGCTTCGCG
CTTCTTCCTCATAGTTCGAAGGGGGGATTCAGATTCAGAGATTCAGATCAGAGAACTCAGAGTCGAGAGAATTCTGTCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCT
AGAGAATTCAGAATATCCTAGATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCTAATCGACCGATCAAGAAGATCAACAAGTCAGTAGACCGATCATCCA
AGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAAAGATCAACAAGTCACAACAGGCCGATCCA
AGAGATCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCTAGATTGCAAAGATCGTCTCATTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGAAACTCCTTTACATCCTTAAAGGTATAAAGCCTCGCAC
CTTTGAGGAGCTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAATGTGAGGAATGAAGGAAGGAACGACGAAG
AGACTATAGAAGAATCCATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAGCGACAAACAAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAGAAG
AAAATCTATCATTTCCCTGATGCCGACATCCCTGATATGCTGGAACAATTACTGGAAGCACAACTGATAGAGCTTCCTAAGTTTCCTTCTCTCCAAGTTCGAGGGTCCTT
ACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCAAAGGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTTGAGGTTCTTAGTTGTACGACTGCTAC
GTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCATTGTTGCATTTGTTCCCTCTTCTCTCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCC
TCCAAGTGCGAAGGATCTTATGTGGTGCATTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGG
TTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCAAGCACTTCGCTGCATTTCCTTCTCCCAAATTCGAACGTTCCCACGCAGTTCATTCCTCCAAG
TTCGAAGGTTTTCCGCTACTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACATCACTTCGTTGCAGTTCCCCTTCCTCCAAGTTCGAAGGTGTTCTCACGCGCTTGCT
GCAGTTCCTTCCTCCAAGTTCGTGGGTGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTCGAGGGTTCTCACGTTTCACACGTCGCTTCGCTGCGTTCCCTTC
CTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAAGCCTCACGTTTGAACCCGCTTCGCTGCAGTTTCTTCCTCCAAGTTCGAAGGTTCTCACGTT
TCACACGTCGCCTTCGCTGCAGTTCCTTCCTCAAAAGTTCAAAGGTTCGGAGGTTCTCACGCGTTCCTTCCTCAAAGTTCAAAGGTTCGGAGGTTCTCACGCGCTTCGCG
CTTCTTCCTCATAGTTCGAAGGGGGGATTCAGATTCAGAGATTCAGATCAGAGAACTCAGAGTCGAGAGAATTCTGTCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCT
AGAGAATTCAGAATATCCTAGATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCTAATCGACCGATCAAGAAGATCAACAAGTCAGTAGACCGATCATCCA
AGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAAAGATCAACAAGTCACAACAGGCCGATCCA
AGAGATCATTAA
Protein sequenceShow/hide protein sequence
MSLDCKDRLIELSSVEMCIQGMHWKLLYILKGIKPRTFEELATRAHDMELSIASRENQDLLLPNVRNEGRNDEETIEESMVVNTTLPKSSSKEKRQTNGAHHLTLKERQK
KIYHFPDADIPDMLEQLLEAQLIELPKFPSLQVRGSLHCTLLRCSFSKFKGFFVVSCCVVPSPSLRFLVVRLLRCSSSKCEGSYVVHCCICSLFSQVRGFSVVRLLRCSS
SKCEGSYVVHCCIVPSSLKFDGSHAASLEFLLPKFEGSHALRCSSFSPSSKVQALRCISFSQIRTFPRSSFLQVRRFSATAVHSSKFEGSHITSLQFPFLQVRRCSHALA
AVPSSKFVGVLTRFAAVPSSKFRGFSRFTRRFAAFPSSKFEGSHALRCSSFLKASRLNPLRCSFFLQVRRFSRFTRRLRCSSFLKSSKVRRFSRVPSSKFKGSEVLTRFA
LLPHSSKGGFRFRDSDQRTQSRENSVRVQSHQKSESLENSEYPRFRIQPTQDSEDHQANRPIKKINKSVDRSSKKINKSADRSSNRSSEKINKSVDRSSKKINKSQQADP
RDH