; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000684 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000684
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr4:12780188..12788678
RNA-Seq ExpressionLag0000684
SyntenyLag0000684
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.8e-0867.39Show/hide
Query:  RDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFR
        RDCPLI  GESG  VDSI L F G+DR+GSWEHN+TR   L+P FR
Subjt:  RDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.9e-0967.39Show/hide
Query:  DCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
        DCPLI+  ESG   DS+ L FWG+DRV SWEHNHTR  SL+P FRE
Subjt:  DCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-0560Show/hide
Query:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
        H  S GL  ++ RDCPLI  GESG   DSI L FWG+DRVG W+H
Subjt:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-1266.1Show/hide
Query:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
        HP S GL  ++ RDCPL   GESG  VDSI L FWG+DRVGSWEHNHTR  S IP FR+
Subjt:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-0560Show/hide
Query:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
        H  S GL  ++ RDCPLI  GESG   DSI L FWG+DRVG W+H
Subjt:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.3e-0867.39Show/hide
Query:  RDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFR
        RDCPLI  GESG  VDSI L F G+DR+GSWEHN+TR   L+P FR
Subjt:  RDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFR
A0A5A7U202 Reverse transcriptase4.1e-0560Show/hide
Query:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
        H  S GL  ++ RDCPLI  GESG   DSI L FWG+DRVG W+H
Subjt:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
A0A5A7U2P4 Integrase catalytic domain-containing protein9.3e-1067.39Show/hide
Query:  DCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
        DCPLI+  ESG   DS+ L FWG+DRV SWEHNHTR  SL+P FRE
Subjt:  DCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
A0A5D3C3J6 Gag/pol protein5.3e-1366.1Show/hide
Query:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
        HP S GL  ++ RDCPL   GESG  VDSI L FWG+DRVGSWEHNHTR  S IP FR+
Subjt:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRE
A0A5D3CBX3 Reverse transcriptase4.1e-0560Show/hide
Query:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
        H  S GL  ++ RDCPLI  GESG   DSI L FWG+DRVG W+H
Subjt:  HPVSYGL--LFTRDCPLIFMGESGLHVDSISLQFWGRDRVGSWEH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGAGACGCCATCCTCAAGCATCTCGATGCTCTGGAAGTGGAGGGCCAAGAACTTCACCGTCGGTGTCTCAACACCAATCCGTTTATTTAAAGCCCCCG
TTTGCGATTAGGGCAGCAGTTTTTGGGAGTTGGAGAAGCATAGAGGGTTCCAGCAGTCGTTTCCTCTCGGGTTTCACTCTGATTCTTCATCCCTCTCTTGTATTT
TTACAATTTCCAGTTGGAACCTCGGGATTGAGCCTCGACAACTCCCATCCCGTCAGTTATGGACTTCTGTTCACAAGGGATTGTCCTTTGATTTTTATGGGTGAG
AGTGGCCTGCACGTCGACTCAATAAGCCTTCAATTTTGGGGACGAGACCGAGTGGGGAGCTGGGAACATAACCATACAAGAGGGAAATCACTCATTCCTGACTTT
AGGGAAAACAGAGGAAAGTTGGAAATTACACAGAAATGCGACCACATTTCTGGAAAGGTAAATTTCAAATACGACCGCATTTCTGGAAAAATAGAGGTCGTTCCG
AGTCCGTCGCAGAATGTATTGTTGAGCGACTTGAGGGAAGCTTGTCTTCACTCTATAAAAGGGAGAGGCCGCCCAAGTCAAATTCATTCCACTCTTGGAAAGGGA
TCACTTCTCATTTCCACTATTGGGAGCCAAAAAGAGGAGAAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGAGACGCCATCCTCAAGCATCTCGATGCTCTGGAAGTGGAGGGCCAAGAACTTCACCGTCGGTGTCTCAACACCAATCCGTTTATTTAAAGCCCCCG
TTTGCGATTAGGGCAGCAGTTTTTGGGAGTTGGAGAAGCATAGAGGGTTCCAGCAGTCGTTTCCTCTCGGGTTTCACTCTGATTCTTCATCCCTCTCTTGTATTT
TTACAATTTCCAGTTGGAACCTCGGGATTGAGCCTCGACAACTCCCATCCCGTCAGTTATGGACTTCTGTTCACAAGGGATTGTCCTTTGATTTTTATGGGTGAG
AGTGGCCTGCACGTCGACTCAATAAGCCTTCAATTTTGGGGACGAGACCGAGTGGGGAGCTGGGAACATAACCATACAAGAGGGAAATCACTCATTCCTGACTTT
AGGGAAAACAGAGGAAAGTTGGAAATTACACAGAAATGCGACCACATTTCTGGAAAGGTAAATTTCAAATACGACCGCATTTCTGGAAAAATAGAGGTCGTTCCG
AGTCCGTCGCAGAATGTATTGTTGAGCGACTTGAGGGAAGCTTGTCTTCACTCTATAAAAGGGAGAGGCCGCCCAAGTCAAATTCATTCCACTCTTGGAAAGGGA
TCACTTCTCATTTCCACTATTGGGAGCCAAAAAGAGGAGAAAGATTAG
Protein sequenceShow/hide protein sequence
MASRRHPQASRCSGSGGPRTSPSVSQHQSVYLKPPFAIRAAVFGSWRSIEGSSSRFLSGFTLILHPSLVFLQFPVGTSGLSLDNSHPVSYGLLFTRDCPLIFMGE
SGLHVDSISLQFWGRDRVGSWEHNHTRGKSLIPDFRENRGKLEITQKCDHISGKVNFKYDRISGKIEVVPSPSQNVLLSDLREACLHSIKGRGRPSQIHSTLGKG
SLLISTIGSQKEEKD