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Lag0000694 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000694
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein DEK
Genome locationchr4:13166860..13170602
RNA-Seq ExpressionLag0000694
SyntenyLag0000694
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:2000779 - regulation of double-strand break repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0016874 - ligase activity (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsIPR044198 - Protein DEK


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98436.1 protein DEK [Cucumis melo var. makuwa]5.5e-3493.33Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVKEK+EKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQK KKRRR+SSGK VGSGESAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_008464404.1 PREDICTED: protein DEK [Cucumis melo]5.5e-3493.33Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVKEK+EKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQK KKRRR+SSGK VGSGESAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_022135017.1 protein DEK [Momordica charantia]6.5e-3593.33Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVK+KLEKCVKEKLVDFCDVLNIPINK SVKKEE+SAKLLEFLESPHATTDVLLADKEQKGKKRRR SSGK+VGSGESAEVSAK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_022921407.1 DNA ligase 1 [Cucurbita moschata]7.2e-3492.22Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVKEKLEKC KEKLVDFCDVLNIPINK +VKKEELSAKLLEFLESPHATTDVLLADK+QKGKKRRRASSGK VGSGESAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_023515903.1 protein DEK-like [Cucurbita pepo subsp. pepo]7.2e-3492.22Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVKEKLEKC KEKLVDFCDVLNIPINK +VKKEELSAKLLEFLESPHATTDVLLADK+QKGKKRRRASSGK VGSGESAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

TrEMBL top hitse value%identityAlignment
A0A1S3CMY3 protein DEK2.7e-3493.33Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVKEK+EKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQK KKRRR+SSGK VGSGESAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A5D3BHB4 Protein DEK2.7e-3493.33Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVKEK+EKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQK KKRRR+SSGK VGSGESAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A6J1C1G8 protein DEK3.1e-3593.33Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVK+KLEKCVKEKLVDFCDVLNIPINK SVKKEE+SAKLLEFLESPHATTDVLLADKEQKGKKRRR SSGK+VGSGESAEVSAK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A6J1E0D6 DNA ligase 13.5e-3492.22Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQRSKVKEKLEKC KEKLVDFCDVLNIPINK +VKKEELSAKLLEFLESPHATTDVLLADK+QKGKKRRRASSGK VGSGESAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A6J1F002 protein DEK-like5.9e-3491.11Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EK RS+VKEKLEKCVKEKLVDFCDVLNIPINK +VKKEELSAKLLEFLESPHATTDVLLADKEQKG+KRRRASSGKVVGSG+SAEV AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G48710.1 DEK domain-containing chromatin associated protein5.5e-2463.33Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQR+K KEKL+KC+KEKL+DFCDVL+IP+NK++VKKEEL+ ++LEFL  P AT D+LLAD E++ KKR++++S K V SGES+ V AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

AT4G26630.1 DEK domain-containing chromatin associated protein1.4e-1451.52Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDV----LLADKEQ--KGKKRRRA--SSGKVVGSGESAEVSAKS
        ++K + KVKEKLEKC KEKL +FCDVL+I I KA+ KKE++  KL EFLE PH T DV     +++KE+  KG KR+R    +    GS  S++ SAKS
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDV----LLADKEQ--KGKKRRRA--SSGKVVGSGESAEVSAKS

AT5G55660.1 DEK domain-containing chromatin associated protein3.2e-1649.45Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAKS
        +EK + KVKEK EK  KEKL++FCD+ +I + KA+ KKE++  KL+EFLE PHATTDVL+ +KE+  K++R            S++ SAKS
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAKS

AT5G63550.1 DEK domain-containing chromatin associated protein9.7e-2156.67Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQR+++KEK++KCVKEKL+ FCDVL+IPI++++VKKEEL+ K+LEFLESP  T DV++AD+E+  K++     GK   SGES++  AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

AT5G63550.2 DEK domain-containing chromatin associated protein1.5e-2158.89Show/hide
Query:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        +EKQR+++KEK++KCVKEKL+ FCDVL+IPI++++VKKEEL+ K+LEFLESP  T DV++AD+E++ KKR+  S+ K   SGES++  AK
Subjt:  KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAGGAAAAGCAAAGGTCAAAGGTAAAGGAGAAGCTCGAGAAATGTGTCAAAGAAAAATTAGTGGATTTTTGTGATGTGCTAAATATCCCAATAAACAAAGCCAG
TGTAAAGAAGGAGGAACTCTCGGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACGGATGTTTTACTGGCTGATAAGGAGCAGAAAGGCAAAAAGCGACGGA
GGGCCAGTTCAGGCAAGGTAGTTGGTTCTGGAGAATCTGCAGAAGTGTCTGCTAAGTCCCTTATCAAGTGGTATCAGAGCCATGCCCCGGGAGTAGTCGTGTTCGGTGGA
ATCCTCGGGTTCCGAACAAAGAAAGTTGTGAGCCTTAATAGTCATGGTGGAGGTCCGTGGTTGAGCTCTGGGTGGGCGGGTATACTCCGGAGAAGAGGAGTCGTCCTAGA
TAAGAGCAAGAACTCTCGGCTGTTGAAGTTGTGGGACCACTACGACAATGATTACCTTCCTTCTGAGTATCAGCTTGATATAACTTCTATCAAAATCACTGACTATATGT
GTACTTATTTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAGGAAAAGCAAAGGTCAAAGGTAAAGGAGAAGCTCGAGAAATGTGTCAAAGAAAAATTAGTGGATTTTTGTGATGTGCTAAATATCCCAATAAACAAAGCCAG
TGTAAAGAAGGAGGAACTCTCGGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACGGATGTTTTACTGGCTGATAAGGAGCAGAAAGGCAAAAAGCGACGGA
GGGCCAGTTCAGGCAAGGTAGTTGGTTCTGGAGAATCTGCAGAAGTGTCTGCTAAGTCCCTTATCAAGTGGTATCAGAGCCATGCCCCGGGAGTAGTCGTGTTCGGTGGA
ATCCTCGGGTTCCGAACAAAGAAAGTTGTGAGCCTTAATAGTCATGGTGGAGGTCCGTGGTTGAGCTCTGGGTGGGCGGGTATACTCCGGAGAAGAGGAGTCGTCCTAGA
TAAGAGCAAGAACTCTCGGCTGTTGAAGTTGTGGGACCACTACGACAATGATTACCTTCCTTCTGAGTATCAGCTTGATATAACTTCTATCAAAATCACTGACTATATGT
GTACTTATTTTGTTTAG
Protein sequenceShow/hide protein sequence
MRKEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAKSLIKWYQSHAPGVVVFGG
ILGFRTKKVVSLNSHGGGPWLSSGWAGILRRRGVVLDKSKNSRLLKLWDHYDNDYLPSEYQLDITSIKITDYMCTYFV