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Lag0000724 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000724
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr4:14117549..14118121
RNA-Seq ExpressionLag0000724
SyntenyLag0000724
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-2742.49Show/hide
Query:  QGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRK
        + HP AK + +K F +++DL+YVFG D ATG  SE   + G   SNM +D V L  S   D  I        +MS DE +     Q       S GSKRK
Subjt:  QGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRK

Query:  RSGSDTHIAEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLD
        R      + E+++S TE    QLK+I +W KEKRATE + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC +LL+
Subjt:  RSGSDTHIAEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLD

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.6e-2741.85Show/hide
Query:  KDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPD-DEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHI
        KD+ +K F +++DL YVFGKDRAT   SE   ++GSN+P+    D+     +D  IP       +MS DE +     Q       S GSKRK+       
Subjt:  KDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPD-DEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHI

Query:  AEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLL
         E++ S  E    QLK+IA W KEKRATE + R +++  L ++PEL +R R KL+ ILF +++A E F SIP   KLEYC +LL
Subjt:  AEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLL

KAA0046928.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2640Show/hide
Query:  GHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGS
        GHP AK + NK F+H+++L+YVFGKDRATG  +E+  ++GSN P      +A    DT  PP   P  NMS D+  +T  ++       S GSKRKR G 
Subjt:  GHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGS

Query:  DTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDK
         T   +IV +      EQL  IAEW   +R      R +IV HL  +PEL    R +LM IL  N+   ++F  +P  +K  YC L+L +
Subjt:  DTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.6e-2841.84Show/hide
Query:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR
        ++ HP AK + +K F +++DL+YVFGKDRATG  SE    +G   SNM +D + L  S + D  IP       +MS DE +     Q       S  SKR
Subjt:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR

Query:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKL
        KR        E++ S      EQLK+IA+W KEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC +LL  +
Subjt:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKL

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]7.0e-2940Show/hide
Query:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRS
        ++ HP  K + NK F +F+DLAYVFGKD ATG+ +E+ G+M S++P    + +++ ++  H         ++S+DE   TP            GSKRK  
Subjt:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRS

Query:  GSDTHIAEIVTS----FTEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLL
        G  + + ++  +      +QLKSIAEWSK++ ATE + R K+V  L ++P+L  ++++K M+I+F N+  TESF SIP  +KLEYCELLL
Subjt:  GSDTHIAEIVTS----FTEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859537.6e-2941.84Show/hide
Query:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR
        ++ HP AK + +K F +++DL+YVFGKDRATG  SE    +G   SNM +D + L  S + D  IP       +MS DE +     Q       S  SKR
Subjt:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR

Query:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKL
        KR        E++ S      EQLK+IA+W KEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC +LL  +
Subjt:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKL

A0A5A7SQU2 Putative nuclease HARBI14.2e-2741.85Show/hide
Query:  KDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPD-DEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHI
        KD+ +K F +++DL YVFGKDRAT   SE   ++GSN+P+    D+     +D  IP       +MS DE +     Q       S GSKRK+       
Subjt:  KDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPD-DEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHI

Query:  AEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLL
         E++ S  E    QLK+IA W KEKRATE + R +++  L ++PEL +R R KL+ ILF +++A E F SIP   KLEYC +LL
Subjt:  AEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLL

A0A5A7U0H7 Retrotransposon protein7.6e-2941.84Show/hide
Query:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR
        ++ HP AK + +K F +++DL+YVFGKDRATG  SE    +G   SNM +D + L  S + D  IP       +MS DE +     Q       S  SKR
Subjt:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR

Query:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKL
        KR        E++ S      EQLK+IA+W KEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC +LL  +
Subjt:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKL

A0A5D3BZU3 Retrotransposon protein4.9e-2842.49Show/hide
Query:  QGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRK
        + HP AK + +K F +++DL+YVFG D ATG  SE   + G   SNM +D V L  S   D  I        +MS DE +     Q       S GSKRK
Subjt:  QGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRK

Query:  RSGSDTHIAEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLD
        R      + E+++S TE    QLK+I +W KEKRATE + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC +LL+
Subjt:  RSGSDTHIAEIVTSFTE----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLD

A0A5D3CVB7 Retrotransposon protein1.2e-2639.69Show/hide
Query:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMP---DDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR
        ++ HP  K + NK F +++D++YVFGKD+AT   SE   ++GSN+P   +D V L  S   D  IP        MS DE + T   Q       S  SKR
Subjt:  MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMP---DDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKR

Query:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLD
        K+        E++ S      +QLK+IA+W KEKRA + + R  +V  L ++P+L NR R K++ ILF++++  E F SIP  LKLEYC +LL+
Subjt:  KRSGSDTHIAEIVTSF----TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGGCATCCTATCGCAAAAGACATGCGTAACAAGCCTTTCCTGCATTTCGAAGACTTGGCATATGTCTTTGGGAAGGATCGAGCCACAGGGAAGGTGTCGGAGGT
GATGGGCGAGATGGGATCCAACATGCCAGATGATGAGGTAGACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCACCGTTCACCATGCCTATTGCGAACATGTCAG
AGGATGAACCTTGGGATACGCCAAACAGTCAAACTTGCCCAACAGGAAGGCCGTCACATGGGAGCAAGAGGAAGAGGTCTGGGTCTGACACGCACATAGCAGAAATTGTC
ACCTCATTTACAGAGCAACTGAAGTCAATTGCAGAGTGGTCGAAAGAAAAACGTGCCACAGAGGCTGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCAGA
ATTGGATAACCGAAAGAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGTTGCTCTGAAGTTGGAGTATTGTGAAC
TCCTCCTGGACAAACTCGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGGCATCCTATCGCAAAAGACATGCGTAACAAGCCTTTCCTGCATTTCGAAGACTTGGCATATGTCTTTGGGAAGGATCGAGCCACAGGGAAGGTGTCGGAGGT
GATGGGCGAGATGGGATCCAACATGCCAGATGATGAGGTAGACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCACCGTTCACCATGCCTATTGCGAACATGTCAG
AGGATGAACCTTGGGATACGCCAAACAGTCAAACTTGCCCAACAGGAAGGCCGTCACATGGGAGCAAGAGGAAGAGGTCTGGGTCTGACACGCACATAGCAGAAATTGTC
ACCTCATTTACAGAGCAACTGAAGTCAATTGCAGAGTGGTCGAAAGAAAAACGTGCCACAGAGGCTGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCAGA
ATTGGATAACCGAAAGAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGTTGCTCTGAAGTTGGAGTATTGTGAAC
TCCTCCTGGACAAACTCGGCTGA
Protein sequenceShow/hide protein sequence
MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHIAEIV
TSFTEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKLG