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Lag0000730 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000730
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr4:14454630..14455040
RNA-Seq ExpressionLag0000730
SyntenyLag0000730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]3.3e-2057.14Show/hide
Query:  DKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVL----NQATSIASSSSHHNSDIEVEEDEYDLNDPFLDSQPM
        +KY+F HA I  +K+WFV+NGYLQD+ + KNV+FLN KSKL+A LAQ T++ADFQ++L    N +TS  S+SS    D E  + EYDL++PFLDSQPM
Subjt:  DKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVL----NQATSIASSSSHHNSDIEVEEDEYDLNDPFLDSQPM

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]7.8e-2255.56Show/hide
Query:  LVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDIEVEED----EYDLND
        L K L+IK W+KYNF HA I  +K+WF +N YLQD+ ++KNVEFLN KSKL+ ALAQ T++ADFQ++L+ A + +SSS   +S I+ +E+    EYDL+D
Subjt:  LVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDIEVEED----EYDLND

Query:  PFLDSQPM
          LDSQPM
Subjt:  PFLDSQPM

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]1.5e-1235.07Show/hide
Query:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDI
        F  NFQ      FK L K L+IKWW+K+N+SH  +N++K WF  N +LQD+  +++  FL +K+ +++ LA  +++ +F  V+N   ++  + S  N D+
Subjt:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDI

Query:  -------------EVEEDEY---DLNDPFLDSQP
                     +++ D Y   D+NDPFLD+QP
Subjt:  -------------EVEEDEY---DLNDPFLDSQP

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]3.3e-2062.67Show/hide
Query:  FQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADF
        + T +YP +K L+K L+IKWW KYNF HA I  +K+WF DNGYLQD+ ++KN+EFLN KSKL+AALAQ T++ADF
Subjt:  FQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADF

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.5e-1236.36Show/hide
Query:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQAT-----------SI
        F  NFQ      FK L K L+IKWW+K+N+SH  +N++K WF  N +LQD+  +++  FL +K+ +++ LA  +++ +F  V+N                
Subjt:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQAT-----------SI

Query:  ASSSSHHNSDIEVEEDEY---DLNDPFLDSQP
         S +S +N+D + + D Y   D+NDPFLD+QP
Subjt:  ASSSSHHNSDIEVEEDEY---DLNDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein1.6e-2057.14Show/hide
Query:  DKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVL----NQATSIASSSSHHNSDIEVEEDEYDLNDPFLDSQPM
        +KY+F HA I  +K+WFV+NGYLQD+ + KNV+FLN KSKL+A LAQ T++ADFQ++L    N +TS  S+SS    D E  + EYDL++PFLDSQPM
Subjt:  DKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVL----NQATSIASSSSHHNSDIEVEEDEYDLNDPFLDSQPM

A0A5A7SWC0 Uncharacterized protein3.8e-2255.56Show/hide
Query:  LVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDIEVEED----EYDLND
        L K L+IK W+KYNF HA I  +K+WF +N YLQD+ ++KNVEFLN KSKL+ ALAQ T++ADFQ++L+ A + +SSS   +S I+ +E+    EYDL+D
Subjt:  LVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDIEVEED----EYDLND

Query:  PFLDSQPM
          LDSQPM
Subjt:  PFLDSQPM

A0A5A7U3G5 Polyprotein7.1e-1335.07Show/hide
Query:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDI
        F  NFQ      FK L K L+IKWW+K+N+SH  +N++K WF  N +LQD+  +++  FL +K+ +++ LA  +++ +F  V+N   ++  + S  N D+
Subjt:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSSSHHNSDI

Query:  -------------EVEEDEY---DLNDPFLDSQP
                     +++ D Y   D+NDPFLD+QP
Subjt:  -------------EVEEDEY---DLNDPFLDSQP

A0A5A7UZX0 Polyprotein1.6e-2062.67Show/hide
Query:  FQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADF
        + T +YP +K L+K L+IKWW KYNF HA I  +K+WF DNGYLQD+ ++KN+EFLN KSKL+AALAQ T++ADF
Subjt:  FQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADF

A0A5A7V6D1 Retrotransposable element Tf27.1e-1336.36Show/hide
Query:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQAT-----------SI
        F  NFQ      FK L K L+IKWW+K+N+SH  +N++K WF  N +LQD+  +++  FL +K+ +++ LA  +++ +F  V+N                
Subjt:  FSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQAT-----------SI

Query:  ASSSSHHNSDIEVEEDEY---DLNDPFLDSQP
         S +S +N+D + + D Y   D+NDPFLD+QP
Subjt:  ASSSSHHNSDIEVEEDEY---DLNDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTCCTCTCAATATGCGTTTTTGTTTATATTTCCAAATTCCCTGGATTTTCAGTGAATTTCCAGACAAATACATATCCATATTTCAAACAACTTGTCAAAATTCT
TCAGATCAAATGGTGGGATAAGTATAATTTTTCCCATGCCAACATCAATGAAGTCAAACAATGGTTTGTCGATAATGGCTACCTTCAAGACCTAGCAGAAAAGAAGAATG
TTGAATTCCTAAATTCAAAATCAAAGCTAATAGCTGCTTTAGCGCAAACTACTTCCGAGGCAGACTTTCAAAAGGTTCTGAATCAAGCAACTTCAATAGCATCTTCATCT
TCTCATCATAATTCTGACATTGAAGTCGAAGAAGATGAATATGACCTCAATGATCCTTTCCTAGATTCACAACCCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTTCCTCTCAATATGCGTTTTTGTTTATATTTCCAAATTCCCTGGATTTTCAGTGAATTTCCAGACAAATACATATCCATATTTCAAACAACTTGTCAAAATTCT
TCAGATCAAATGGTGGGATAAGTATAATTTTTCCCATGCCAACATCAATGAAGTCAAACAATGGTTTGTCGATAATGGCTACCTTCAAGACCTAGCAGAAAAGAAGAATG
TTGAATTCCTAAATTCAAAATCAAAGCTAATAGCTGCTTTAGCGCAAACTACTTCCGAGGCAGACTTTCAAAAGGTTCTGAATCAAGCAACTTCAATAGCATCTTCATCT
TCTCATCATAATTCTGACATTGAAGTCGAAGAAGATGAATATGACCTCAATGATCCTTTCCTAGATTCACAACCCATGTGA
Protein sequenceShow/hide protein sequence
MYFLSICVFVYISKFPGFSVNFQTNTYPYFKQLVKILQIKWWDKYNFSHANINEVKQWFVDNGYLQDLAEKKNVEFLNSKSKLIAALAQTTSEADFQKVLNQATSIASSS
SHHNSDIEVEEDEYDLNDPFLDSQPM