; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000746 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000746
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:15010344..15011690
RNA-Seq ExpressionLag0000746
SyntenyLag0000746
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ55763.1 putative RNA-directed DNA polymerase [Rosa chinensis]7.7e-1730.14Show/hide
Query:  LLVIFWWSVWNLRNSMSWGGQ-FDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVL-------
        L  ++ W +W+ RN++ W G  F+A +   ++S +L  +  V     +            R  W +PP G LK+N+D S  P+ G+ G G V+       
Subjt:  LLVIFWWSVWNLRNSMSWGGQ-FDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVL-------

Query:  ---------------------CGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS
                             C A G+ LA    + EF++E+D   +V  L+  ++D SEVGR+++D +  L    + KI    R+ N VA+ LA LA S
Subjt:  ---------------------CGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS

Query:  -YVDHVWLEEGPSEISDVI
         +++ VWLEE P  I DV+
Subjt:  -YVDHVWLEEGPSEISDVI

VVA28106.1 PREDICTED: reverse mRNAase [Prunus dulcis]2.1e-1427.4Show/hide
Query:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------
        ++   W++W  RN++ W G Q    D+  F+  Y+  F        +    +  PV        W +PP+G LK N D +  P  G    G V       
Subjt:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------

Query:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS
                            L   +G+ LA  LG A  + E DS  +V  +    QD S +G ++EDV+ + Q + ++   F+PR+ N VAH LA     
Subjt:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS

Query:  YVDH-VWLEEGPSEISDVI
         VD+ +W E  P  I D +
Subjt:  YVDH-VWLEEGPSEISDVI

XP_007206484.2 uncharacterized protein LOC18774466 [Prunus persica]9.4e-1527.4Show/hide
Query:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------
        ++   W++W  RN++ W G Q    ++  F+  Y+  FI       +    +  PV        W +PP+G LK N D +  P  G    G V       
Subjt:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------

Query:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS
                            L   +G+ LA  LG A  + E DS  +V  +    QD S +G ++EDV+ + Q + ++   F+PR+ N VAH LA     
Subjt:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS

Query:  YVDH-VWLEEGPSEISDVI
         VD+ +W E  P  I D +
Subjt:  YVDH-VWLEEGPSEISDVI

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]5.9e-1732.13Show/hide
Query:  LVIFWWSVWNLRNS----MSWGGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGA--
        +V+  W++WN RN      S GG     DL ++S +YL+ +    A       A  VC      +WR P A  LK+NVDA+   +   AG G ++  +  
Subjt:  LVIFWWSVWNLRNS----MSWGGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGA--

Query:  -------------------------DGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPW-DNNKILFSPRQGNRVAHVLASLA
                                 +GI LA + GF  F +ETDSLR+  +L     D SEVG L   ++L L    +     F+ R GN  AH+LA LA
Subjt:  -------------------------DGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPW-DNNKILFSPRQGNRVAHVLASLA

Query:  FSYVD-HVWLEEGPSEISDVI
         +     +W+EE P EIS V+
Subjt:  FSYVD-HVWLEEGPSEISDVI

XP_023884925.1 uncharacterized protein LOC111997106 [Quercus suber]5.5e-1526.7Show/hide
Query:  LVIFW---WSVWNLRNSMSWGGQFDA-RDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGADG
        L +FW   W VWN RN +  GGQ      L   + +Y+  F    +  G      P         W+ PP GE K+N DA++  ++G+ G G ++   +G
Subjt:  LVIFW---WSVWNLRNSMSWGGQFDA-RDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGADG

Query:  ---------------------------IQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAF
                                   I+ A   GF+  +VE D++ +V+ +   ++++S +G +++D+R +L+      I    R GN VAHVLA  A 
Subjt:  ---------------------------IQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAF

Query:  SYVDH--VWLEEGPSEISDVI
        + +D    WLE+ P   ++ +
Subjt:  SYVDH--VWLEEGPSEISDVI

TrEMBL top hitse value%identityAlignment
A0A1R3I426 Uncharacterized protein1.0e-1428.94Show/hide
Query:  GSARWKASGPDFELLVIFWWSVWNLRNSMSWGGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAG----PVCGHEERCVWRSPPAGELKLNVD-----AS
        G+ +W       ++ +I  W+VWN RN+    G    R     + D++RAFI    L  + C A     P  G+E R  W++PP G +K+N D     AS
Subjt:  GSARWKASGPDFELLVIFWWSVWNLRNSMSWGGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAG----PVCGHEERCVWRSPPAGELKLNVD-----AS

Query:  VMPDIGEAG-----------AGCVLCGADG-----------IQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPR
             G  G           AG      DG           I+ ++ +GF + ++E D+L ++K L   +QD+S +G  +E+++L    +++       R
Subjt:  VMPDIGEAG-----------AGCVLCGADG-----------IQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPR

Query:  QGNRVAHVLASLAFSYVDH-VWLEEGPSEISDVIR
         GN  AH LAS  FS  +  +W+EE P+ + DV++
Subjt:  QGNRVAHVLASLAFSYVDH-VWLEEGPSEISDVIR

A0A251NT15 RNase H domain-containing protein4.5e-1527.4Show/hide
Query:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------
        ++   W++W  RN++ W G Q    ++  F+  Y+  FI       +    +  PV        W +PP+G LK N D +  P  G    G V       
Subjt:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------

Query:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS
                            L   +G+ LA  LG A  + E DS  +V  +    QD S +G ++EDV+ + Q + ++   F+PR+ N VAH LA     
Subjt:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS

Query:  YVDH-VWLEEGPSEISDVI
         VD+ +W E  P  I D +
Subjt:  YVDH-VWLEEGPSEISDVI

A0A2P6SAP1 Putative RNA-directed DNA polymerase3.7e-1730.14Show/hide
Query:  LLVIFWWSVWNLRNSMSWGGQ-FDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVL-------
        L  ++ W +W+ RN++ W G  F+A +   ++S +L  +  V     +            R  W +PP G LK+N+D S  P+ G+ G G V+       
Subjt:  LLVIFWWSVWNLRNSMSWGGQ-FDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVL-------

Query:  ---------------------CGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS
                             C A G+ LA    + EF++E+D   +V  L+  ++D SEVGR+++D +  L    + KI    R+ N VA+ LA LA S
Subjt:  ---------------------CGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS

Query:  -YVDHVWLEEGPSEISDVI
         +++ VWLEE P  I DV+
Subjt:  -YVDHVWLEEGPSEISDVI

A0A6J1DBJ7 uncharacterized protein LOC1110189732.8e-1732.13Show/hide
Query:  LVIFWWSVWNLRNS----MSWGGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGA--
        +V+  W++WN RN      S GG     DL ++S +YL+ +    A       A  VC      +WR P A  LK+NVDA+   +   AG G ++  +  
Subjt:  LVIFWWSVWNLRNS----MSWGGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGA--

Query:  -------------------------DGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPW-DNNKILFSPRQGNRVAHVLASLA
                                 +GI LA + GF  F +ETDSLR+  +L     D SEVG L   ++L L    +     F+ R GN  AH+LA LA
Subjt:  -------------------------DGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPW-DNNKILFSPRQGNRVAHVLASLA

Query:  FSYVD-HVWLEEGPSEISDVI
         +     +W+EE P EIS V+
Subjt:  FSYVD-HVWLEEGPSEISDVI

M5WEH8 RNase H domain-containing protein (Fragment)4.5e-1527.4Show/hide
Query:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------
        ++   W++W  RN++ W G Q    ++  F+  Y+  FI       +    +  PV        W +PP+G LK N D +  P  G    G V       
Subjt:  LVIFWWSVWNLRNSMSWGG-QFDARDLWAFSSDYLRAFIWVGALSGE--GCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCV-------

Query:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS
                            L   +G+ LA  LG A  + E DS  +V  +    QD S +G ++EDV+ + Q + ++   F+PR+ N VAH LA     
Subjt:  --------------------LCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFS

Query:  YVDH-VWLEEGPSEISDVI
         VD+ +W E  P  I D +
Subjt:  YVDH-VWLEEGPSEISDVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-0722.22Show/hide
Query:  WSVWNLRNSMSW-GGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGADG--------
        W +W  RN + + G ++DA ++   + +      W      EG  +GP         W++PP   +K N DA+   +    G G +L    G        
Subjt:  WSVWNLRNSMSW-GGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDASVMPDIGEAGAGCVLCGADG--------

Query:  -------------------IQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLA--SLAFSYVD
                           +    +  +   + E+D+  LV +L+        +   +ED++ +L  ++  K  F+PR GN+VA  +A  S++FS  D
Subjt:  -------------------IQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLA--SLAFSYVD

AT5G38920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-0427.78Show/hide
Query:  QLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFSYVDHVWLEEGPSEISDVIRLW
        +L + + + E+DS +LV IL     D+  +  +++D++L+LQ ++  K +F  R GN VA  +A  + S      LE    ++  ++  W
Subjt:  QLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFSYVDHVWLEEGPSEISDVIRLW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGAGTCTGTGTGTTTTGTGCTGTGATTATGTTGAGGACAACCTCTATCTGTTCTGGAAGTGCTCGGTGGAAAGCCTCCGGGCCGGATTTTGAGCTTTTGGTCAT
CTTCTGGTGGTCTGTGTGGAATCTTCGGAATAGCATGAGTTGGGGCGGTCAGTTCGATGCTCGAGACCTATGGGCTTTTTCGAGTGACTACCTTCGTGCTTTCATATGGG
TGGGGGCGTTGTCTGGCGAGGGATGCCTCGCGGGGCCAGTTTGTGGTCATGAGGAGCGCTGTGTGTGGAGGTCGCCTCCTGCTGGGGAGCTAAAACTCAATGTTGATGCC
TCGGTCATGCCTGATATAGGGGAGGCGGGAGCCGGCTGTGTACTGTGTGGGGCTGATGGGATCCAGCTTGCTCGACAGTTGGGGTTTGCTGAGTTTGTGGTGGAGACCGA
CTCTCTAAGGTTGGTTAAAATCCTTCATGGTGGTATCCAGGATGTTTCGGAAGTAGGGCGGCTGATGGAGGATGTCCGATTGATCCTCCAGCCTTGGGACAACAACAAGA
TTTTGTTTTCGCCACGCCAAGGAAACAGGGTGGCGCATGTTTTAGCTAGCCTGGCGTTTTCTTATGTTGACCATGTTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGAT
GTTATAAGGCTATGGGGACATTGCATGATGTTTGGCTGGGAGGAACTGGGTTTGAGGCCATGCGGCTGTGTGGTGGTCCACTTTTGGACAGGGCTGGTTTTGGCGCCTAG
TGGTGGGGTTGGTTGTGGGTTTGTTGGGGATAAACCTGTATATGCAGTTGTGCTTTATCTTTTGCCTGGGATTGAGGTGGTGGCAGGTGGCATATTTGAATCTGGTTTTG
AGTGTTTCTGGTCTATTCTTGCTCCCTTATGCACTTGGCCTTTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCGAGTCTGTGTGTTTTGTGCTGTGATTATGTTGAGGACAACCTCTATCTGTTCTGGAAGTGCTCGGTGGAAAGCCTCCGGGCCGGATTTTGAGCTTTTGGTCAT
CTTCTGGTGGTCTGTGTGGAATCTTCGGAATAGCATGAGTTGGGGCGGTCAGTTCGATGCTCGAGACCTATGGGCTTTTTCGAGTGACTACCTTCGTGCTTTCATATGGG
TGGGGGCGTTGTCTGGCGAGGGATGCCTCGCGGGGCCAGTTTGTGGTCATGAGGAGCGCTGTGTGTGGAGGTCGCCTCCTGCTGGGGAGCTAAAACTCAATGTTGATGCC
TCGGTCATGCCTGATATAGGGGAGGCGGGAGCCGGCTGTGTACTGTGTGGGGCTGATGGGATCCAGCTTGCTCGACAGTTGGGGTTTGCTGAGTTTGTGGTGGAGACCGA
CTCTCTAAGGTTGGTTAAAATCCTTCATGGTGGTATCCAGGATGTTTCGGAAGTAGGGCGGCTGATGGAGGATGTCCGATTGATCCTCCAGCCTTGGGACAACAACAAGA
TTTTGTTTTCGCCACGCCAAGGAAACAGGGTGGCGCATGTTTTAGCTAGCCTGGCGTTTTCTTATGTTGACCATGTTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGAT
GTTATAAGGCTATGGGGACATTGCATGATGTTTGGCTGGGAGGAACTGGGTTTGAGGCCATGCGGCTGTGTGGTGGTCCACTTTTGGACAGGGCTGGTTTTGGCGCCTAG
TGGTGGGGTTGGTTGTGGGTTTGTTGGGGATAAACCTGTATATGCAGTTGTGCTTTATCTTTTGCCTGGGATTGAGGTGGTGGCAGGTGGCATATTTGAATCTGGTTTTG
AGTGTTTCTGGTCTATTCTTGCTCCCTTATGCACTTGGCCTTTCTTTTAG
Protein sequenceShow/hide protein sequence
MSRVCVFCAVIMLRTTSICSGSARWKASGPDFELLVIFWWSVWNLRNSMSWGGQFDARDLWAFSSDYLRAFIWVGALSGEGCLAGPVCGHEERCVWRSPPAGELKLNVDA
SVMPDIGEAGAGCVLCGADGIQLARQLGFAEFVVETDSLRLVKILHGGIQDVSEVGRLMEDVRLILQPWDNNKILFSPRQGNRVAHVLASLAFSYVDHVWLEEGPSEISD
VIRLWGHCMMFGWEELGLRPCGCVVVHFWTGLVLAPSGGVGCGFVGDKPVYAVVLYLLPGIEVVAGGIFESGFECFWSILAPLCTWPFF