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Lag0000766 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000766
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:15502462..15505573
RNA-Seq ExpressionLag0000766
SyntenyLag0000766
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062063.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0454.72Show/hide
Query:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPNLIILTNPT
        Y+  EEVDNS +++QRTFVFDRIK STT SSVFQR+   +K + N   ++  T
Subjt:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPNLIILTNPT
KAA0062088.1 hypothetical protein E6C27_scaffold89G004370 [Cucumis melo var. makuwa]9.3e-0460Show/hide
Query:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPN
        Y   EEVDNS +++QRTFVFDRIK STT SS+FQR+  + K + N
Subjt:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPN
TYK04956.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-0465.85Show/hide
Query:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLK
        Y+  EEVDNS +++QRTFVFDRIK STT SSVFQR+   +K
Subjt:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLK
TrEMBL top hitse value%identityAlignment
A0A5A7V1P3 Ty3-gypsy retrotransposon protein5.3e-0554.72Show/hide
Query:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPNLIILTNPT
        Y+  EEVDNS +++QRTFVFDRIK STT SSVFQR+   +K + N   ++  T
Subjt:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPNLIILTNPT
A0A5A7V3C4 Uncharacterized protein4.5e-0460Show/hide
Query:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPN
        Y   EEVDNS +++QRTFVFDRIK STT SS+FQR+  + K + N
Subjt:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPN
A0A5D3C3F4 Ty3-gypsy retrotransposon protein3.4e-0465.85Show/hide
Query:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLK
        Y+  EEVDNS +++QRTFVFDRIK STT SSVFQR+   +K
Subjt:  YIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATAAATCCTTCTCCAAAACTTTCCAGAAAAAAGAAAAAGAAAACCTTGCAACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTCTGAGAAAGTTGAACA
AAGGACTTTCGTCTTCGATCGCATCAAGTATTCAACTACTCACTCTTCGGTATTCCAAAGAATGAAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACTAATC
CTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGGAGTTCCTCATCTCCAAGTTTGAAG
GTACTCATGCGCTTCACTGGAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTTTCCAAGTTCGAAGGTTCTGATGTTGCACTGCATCC
TTCTCCAAGTTGGAAGGTTCTCATGCTATGCTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGAAGTGGCTTGGATGGCGACGAGGTTCATGATTGTCGGACACCAACAAA
TGGGTCAGACGACCTGCGTGTTCGCCGACAAAGCTCTTCGCTGCAAGACCCATGACCCCAGACGGTGTGCTAGCGGACTCACGGTGACTGATCACATGAGATCTAATCTT
GAGACCAATGGCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATAAATCCTTCTCCAAAACTTTCCAGAAAAAAGAAAAAGAAAACCTTGCAACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTCTGAGAAAGTTGAACA
AAGGACTTTCGTCTTCGATCGCATCAAGTATTCAACTACTCACTCTTCGGTATTCCAAAGAATGAAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACTAATC
CTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGGAGTTCCTCATCTCCAAGTTTGAAG
GTACTCATGCGCTTCACTGGAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTTTCCAAGTTCGAAGGTTCTGATGTTGCACTGCATCC
TTCTCCAAGTTGGAAGGTTCTCATGCTATGCTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGAAGTGGCTTGGATGGCGACGAGGTTCATGATTGTCGGACACCAACAAA
TGGGTCAGACGACCTGCGTGTTCGCCGACAAAGCTCTTCGCTGCAAGACCCATGACCCCAGACGGTGTGCTAGCGGACTCACGGTGACTGATCACATGAGATCTAATCTT
GAGACCAATGGCCAATGA
Protein sequenceShow/hide protein sequence
MLNKSFSKTFQKKEKENLATSYYIDVEEVDNSEKVEQRTFVFDRIKYSTTHSSVFQRMKGSLKVKPNLIILTNPTSEGSDQDHDEDKEFLLSKFEGSHVLRWSSSSPSLK
VLMRFTGVPSLQVQRFSRASLQFLLSKFEGSDVALHPSPSWKVLMLCCFVVPSPSSKEVAWMATRFMIVGHQQMGQTTCVFADKALRCKTHDPRRCASGLTVTDHMRSNL
ETNGQ