CuGenDBv2

Gene ID	Lag0000771
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome location	chr4:15632185..15634471
RNA-Seq Expression	Lag0000771
Synteny	Lag0000771
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAA7055450.1 unnamed protein product [Microthlaspi erraticum]

9.4e-28

47.01

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CF++PKG+  K+ S  A FWW S+  K + HW +W  +C PK  GG+ F+D+ +FNQA+LAKQ W+VL+ P SL+ K L  RYFS+TS LE  + S  
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSG
        SY W+  +WG  +   G
Subjt:  SYFWKGFVWGHHVPTSG

KAG7589161.1 hypothetical protein ISN44_As07g014700 [Arabidopsis suecica]

4.2e-28

36.63

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CFR+ K    +I+S  A+FWW     K +MHW +W  +C+PK  GGL F D+  FNQA+LAKQ WR+L++PTSLVS+V   +YF+  + LE  +    
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWG-----------------------------HHVPTSGYCPICHEEMETTDHALFSCTWATEVW
        SY W+  ++G                             H +  +  CP+C  E ET  H LF C  A+ +W
Subjt:  SYFWKGFVWG-----------------------------HHVPTSGYCPICHEEMETTDHALFSCTWATEVW

XP_013617205.1 PREDICTED: uncharacterized protein LOC106323665 [Brassica oleracea var. oleracea]

4.7e-27

32.57

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CFR+PK +  K++S   +FWW S   K ++ W  W  LC+ KE GGL FKD+  FNQA+LAKQ WR+  NP SLV+++L  RYF+ T  LE ++ +  
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSGYCPICHEEMETTDHALFSCTWATEVWEGILPSMVSELRIPMDIKDRWFSIVARFGDALDLTGVGAWKANPVGGKIVQTVGEIR
        S+ W+  + G  + + G   + H+        L+S  W  +             R PM  +D    +     D +D + VG+W    +   IV+   ++ 
Subjt:  SYFWKGFVWGHHVPTSGYCPICHEEMETTDHALFSCTWATEVWEGILPSMVSELRIPMDIKDRWFSIVARFGDALDLTGVGAWKANPVGGKIVQTVGEIR

Query:  KMIEEGEECTPRDLPCYD
        ++++     TP DL  +D
Subjt:  KMIEEGEECTPRDLPCYD

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]

7.7e-30

51.28

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M  FR+PKG   ++S + A+FWW S     ++HW +W  +C PKE GGLNF+DL  FNQA++AKQVWRVL+NP  LVS+VL  +YF  + VL+ T   + 
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSG
        SYFWKGF+WG  +   G
Subjt:  SYFWKGFVWGHHVPTSG

XP_022546261.1 uncharacterized protein LOC106418827 [Brassica napus]

4.7e-27

40.14

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M C+R+PK    KI+S+ A+FWW   G+   MHWK+W+ +C PKE GGL FKD+ +FN AML KQ+WR++E P +L ++V  GRY+   S L+   S S 
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSGY----CPICHEEMETTDHALFSCTWATEVW
        SY W+  +    +         C  C    E+ +H  F C  A + W
Subjt:  SYFWKGFVWGHHVPTSGY----CPICHEEMETTDHALFSCTWATEVW

TrEMBL top hits

e value

%identity

Alignment

A0A1J3G0X8 Putative mitochondrial protein

3.0e-27

46.15

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CFR+PKGI  K+ S+ A+FWWRS   K ++HW +W  +C PK  GG+ F+D+ +FNQA+LAKQ WR+L++  SL ++VL  RYF  T  LE  +    
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSG
        S+ WK  +WG  +   G
Subjt:  SYFWKGFVWGHHVPTSG

A0A6D2KLU0 Reverse transcriptase domain-containing protein

4.6e-28

47.01

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CF++PKG+  K+ S  A FWW S+  K + HW +W  +C PK  GG+ F+D+ +FNQA+LAKQ W+VL+ P SL+ K L  RYFS+TS LE  + S  
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSG
        SY W+  +WG  +   G
Subjt:  SYFWKGFVWGHHVPTSG

A0A6J1BRN0 uncharacterized protein LOC111004787

3.7e-30

51.28

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M  FR+PKG   ++S + A+FWW S     ++HW +W  +C PKE GGLNF+DL  FNQA++AKQVWRVL+NP  LVS+VL  +YF  + VL+ T   + 
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSG
        SYFWKGF+WG  +   G
Subjt:  SYFWKGFVWGHHVPTSG

A0A803PVI9 Uncharacterized protein

2.3e-27

48.72

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CFR+ K ++ +I  +  KFWW S  +K+ ++WK+W+ LCQPK  GG+ FK   +FNQAMLAKQ WRV  NPTSL+S++L  RYFS +S L+    S  
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSG
        S  W+G VWG  +   G
Subjt:  SYFWKGFVWGHHVPTSG

A0A803QGZ0 Uncharacterized protein

5.1e-27

48.72

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CFRIP  I   I +  A+FWW S G   ++HWK+W  LCQ K  GGL F+ L +FNQAMLAKQ WR+ +NP SL+S +L  RYF  +S+LE     S 
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWKGFVWGHHVPTSG
        S+ W+  +WG  +  SG
Subjt:  SYFWKGFVWGHHVPTSG

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.5e-09

32.94

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRY
        M    +P+ IL ++  L   F W S   K + H   W+ +C PK+ GGL  +   + N+A+++K  WR+L+   SL + VL  +Y
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRY

P93295 Uncharacterized mitochondrial protein AtMg00310

3.1e-21

39.83

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKE-SGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSS
        M CFR+ K +  K++S   +FWW S   K ++ W  W  LC+ KE  GGL F+DL  FNQA+LAKQ +R++  P +L+S++L  RYF  +S++E ++ + 
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKE-SGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSS

Query:  SSYFWKGFVWGHHVPTSG
         SY W+  + G  + + G
Subjt:  SSYFWKGFVWGHHVPTSG

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.7e-22

44.76

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS
        M CF +PK +  +I S+ A FWWR++     MHWK W+ L   K  GG+ FKD+  FN A+L KQ+WR+L  P SL++KV   RYF  +  L   L S  
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSS

Query:  SYFWK
        S+ WK
Subjt:  SYFWK

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.2e-22

39.83

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Query:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKE-SGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSS
        M CFR+ K +  K++S   +FWW S   K ++ W  W  LC+ KE  GGL F+DL  FNQA+LAKQ +R++  P +L+S++L  RYF  +S++E ++ + 
Subjt:  MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKE-SGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSS

Query:  SSYFWKGFVWGHHVPTSG
         SY W+  + G  + + G
Subjt:  SSYFWKGFVWGHHVPTSG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTTGTTTCAGAATCCCAAAAGGTATATTGGTAAAGATCTCATCACTTTGTGCAAAATTCTGGTGGAGGTCACAAGGGACGAAGACAAGGATGCACTGGAAAAACTG
GAATGATCTGTGCCAACCGAAAGAGTCAGGAGGGCTAAATTTCAAGGATCTGGCTAATTTTAATCAGGCTATGCTTGCGAAGCAAGTATGGAGGGTCTTGGAGAATCCTA
CTAGTTTAGTATCAAAGGTTCTTAGTGGACGATACTTCTCAACGACATCGGTATTGGAGGTTACATTGTCATCATCATCGTCGTATTTTTGGAAAGGATTTGTATGGGGA
CATCATGTTCCAACAAGTGGATATTGTCCGATATGCCACGAGGAAATGGAGACTACTGATCATGCTTTATTTTCGTGCACTTGGGCTACGGAAGTTTGGGAAGGAATACT
ACCTTCGATGGTGAGTGAGCTCAGGATACCCATGGACATAAAGGATCGATGGTTTAGCATTGTGGCCCGGTTCGGTGATGCTCTTGATCTAACAGGTGTAGGGGCCTGGA
AGGCGAATCCGGTGGGAGGAAAGATAGTCCAAACGGTGGGTGAGATTCGCAAAATGATTGAAGAAGGAGAAGAGTGTACTCCACGTGATCTTCCTTGCTATGACTTGAAC
AGGACCAAAGCTTGTGGGAGCTTCTTGAAAGATTAG

mRNA sequence

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Protein sequence

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MGCFRIPKGILVKISSLCAKFWWRSQGTKTRMHWKNWNDLCQPKESGGLNFKDLANFNQAMLAKQVWRVLENPTSLVSKVLSGRYFSTTSVLEVTLSSSSSYFWKGFVWG
HHVPTSGYCPICHEEMETTDHALFSCTWATEVWEGILPSMVSELRIPMDIKDRWFSIVARFGDALDLTGVGAWKANPVGGKIVQTVGEIRKMIEEGEECTPRDLPCYDLN
RTKACGSFLKD

Lag0000771 (gene) of Sponge gourd (AG-4) v1 genome