CuGenDBv2

Gene ID	Lag0000784
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr4:16483573..16488567
RNA-Seq Expression	Lag0000784
Synteny	Lag0000784
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025159.1 gag/pol protein [Cucumis melo var. makuwa]

4.6e-76

60.66

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Query:  SEALEKFKEYKAEVENLL------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVT
        SEALEKFKEYK EVENLL                                    VETAV+ILN  PSKSVSETPFELW G K SL HFRIWGCP HVLVT
Subjt:  SEALEKFKEYKAEVENLL------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVT

Query:  NPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST-------------------
        NPKKL SRS+LC FVGYPKETRGG FFDPQEN+VFVSTNATFLE DH+R HKP+SK+VLS    EATD STRVVD+ GPS+                   
Subjt:  NPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST-------------------

Query:  -----RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
             RVV +PN     +ET AVIPDD VEDPL++ Q+MNDVDKDQW KAMD EMESMYFN V +LVD PEG
Subjt:  -----RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-73

58.91

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Query:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV
        SEALEKFKEYK EVENLL                                       VETAV+ILN VPSKSVSE PFELW   K SL HFRIWGCPAHV
Subjt:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV

Query:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------
        LVTNPKKL+ RS+LC FVGYPKETRGG FFDPQEN+VFVSTNATFLE DH+R HKP+SK+VLS    EATD STRVVD+ GPS+                
Subjt:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------

Query:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
                RVV +PN     +ET  VIPDD VEDPL++ Q+MNDVDKDQW KAMD EMESMYFN V +LVD  EG
Subjt:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

KAA0058368.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-74

59.64

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Query:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV
        SEALEKFKEYK EVENLL                                       VETAV+ILN VPSKSVSETPFEL  G K SL HFRIWGCPAHV
Subjt:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV

Query:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------
        LVTNPKKL+ RS+LC FVGYPKETRGG FFDPQEN+VFVSTNATFLE DH+R HKP+SK+VLS    EATD STRVVD+ GPS+                
Subjt:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------

Query:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
                RVV +PN     +ET  VIPDD VEDPL++ Q+MNDVDKDQW KAMD EMESMYFN V +LVD PEG
Subjt:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

KAA0062410.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-73

57.45

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Query:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV
        SEALEKFKEYKAEVENLL                                       V+TAV+ILN VPSKSVSETPFELW G K SL HFRIWGCPAHV
Subjt:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV

Query:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRV--------------
        LVTNPKKL+ RS+LC F+GYPKETRGG FFDPQEN+VF+ TNATFLE DH+R+HKPQSK+VL+    EATD STRVVD+ GPS+RV              
Subjt:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRV--------------

Query:  ----------VDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
                  V +PN     +ET  VIPDD  EDPL++ Q+ NDVDKDQW KAMD +MESMYFN + +LVD PEG
Subjt:  ----------VDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

TYK06521.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-76

66.1

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Query:  SEALEKFKEYKAEVENLLVETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFV
        SEALEKFKEYKAEVENLL+ETAV ILN VPSKS+SET F+LW G K SL HFRIW CP HVL+TNPKKL+SRS+LC FVGYPKETRGG FFDPQEN+VFV
Subjt:  SEALEKFKEYKAEVENLLVETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFV

Query:  STNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRVVDEPNTS-----------------------------ETLAVIPDDEVEDPLTF
        STNATFLE  H+R+HKP+SK+VL+    +ATD STRVVD+ GPS+R VDE  TS                             ET  VIPDD VEDPL++
Subjt:  STNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRVVDEPNTS-----------------------------ETLAVIPDDEVEDPLTF

Query:  NQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPE
         Q+MNDVDK+QW KAMD EMESMYFN V +LVD PE
Subjt:  NQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIN2 Gag/pol protein

2.2e-76

60.66

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Query:  SEALEKFKEYKAEVENLL------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVT
        SEALEKFKEYK EVENLL                                    VETAV+ILN  PSKSVSETPFELW G K SL HFRIWGCP HVLVT
Subjt:  SEALEKFKEYKAEVENLL------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVT

Query:  NPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST-------------------
        NPKKL SRS+LC FVGYPKETRGG FFDPQEN+VFVSTNATFLE DH+R HKP+SK+VLS    EATD STRVVD+ GPS+                   
Subjt:  NPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST-------------------

Query:  -----RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
             RVV +PN     +ET AVIPDD VEDPL++ Q+MNDVDKDQW KAMD EMESMYFN V +LVD PEG
Subjt:  -----RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

A0A5A7USZ2 Gag/pol protein

1.0e-73

58.91

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Query:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV
        SEALEKFKEYK EVENLL                                       VETAV+ILN VPSKSVSE PFELW   K SL HFRIWGCPAHV
Subjt:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV

Query:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------
        LVTNPKKL+ RS+LC FVGYPKETRGG FFDPQEN+VFVSTNATFLE DH+R HKP+SK+VLS    EATD STRVVD+ GPS+                
Subjt:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------

Query:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
                RVV +PN     +ET  VIPDD VEDPL++ Q+MNDVDKDQW KAMD EMESMYFN V +LVD  EG
Subjt:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

A0A5A7UT80 Gag/pol protein

7.1e-75

59.64

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Query:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV
        SEALEKFKEYK EVENLL                                       VETAV+ILN VPSKSVSETPFEL  G K SL HFRIWGCPAHV
Subjt:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV

Query:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------
        LVTNPKKL+ RS+LC FVGYPKETRGG FFDPQEN+VFVSTNATFLE DH+R HKP+SK+VLS    EATD STRVVD+ GPS+                
Subjt:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPST----------------

Query:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
                RVV +PN     +ET  VIPDD VEDPL++ Q+MNDVDKDQW KAMD EMESMYFN V +LVD PEG
Subjt:  --------RVVDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

A0A5D3C3N8 Gag/pol protein

9.9e-77

66.1

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Query:  SEALEKFKEYKAEVENLLVETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFV
        SEALEKFKEYKAEVENLL+ETAV ILN VPSKS+SET F+LW G K SL HFRIW CP HVL+TNPKKL+SRS+LC FVGYPKETRGG FFDPQEN+VFV
Subjt:  SEALEKFKEYKAEVENLLVETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFV

Query:  STNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRVVDEPNTS-----------------------------ETLAVIPDDEVEDPLTF
        STNATFLE  H+R+HKP+SK+VL+    +ATD STRVVD+ GPS+R VDE  TS                             ET  VIPDD VEDPL++
Subjt:  STNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRVVDEPNTS-----------------------------ETLAVIPDDEVEDPLTF

Query:  NQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPE
         Q+MNDVDK+QW KAMD EMESMYFN V +LVD PE
Subjt:  NQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPE

A0A5D3DS50 Gag/pol protein

7.9e-74

57.45

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Query:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV
        SEALEKFKEYKAEVENLL                                       V+TAV+ILN VPSKSVSETPFELW G K SL HFRIWGCPAHV
Subjt:  SEALEKFKEYKAEVENLL---------------------------------------VETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHV

Query:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRV--------------
        LVTNPKKL+ RS+LC F+GYPKETRGG FFDPQEN+VF+ TNATFLE DH+R+HKPQSK+VL+    EATD STRVVD+ GPS+RV              
Subjt:  LVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRV--------------

Query:  ----------VDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
                  V +PN     +ET  VIPDD  EDPL++ Q+ NDVDKDQW KAMD +MESMYFN + +LVD PEG
Subjt:  ----------VDEPN----TSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.1e-11

26.45

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Query:  VETAVYILNVVPSKSVS-ETPFELWGGHKDSLRHFRIWGCP--AHVLVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLE-------
        V+TA Y++N  PS  ++ E P  +W   + S  H +++GC   AHV      KLD +S  C+F+GY  E  G   +DP + KV  S +  F E       
Subjt:  VETAVYILNVVPSKSVS-ETPFELWGGHKDSLRHFRIWGCP--AHVLVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLE-------

Query:  ------------------------------VDHVREHKPQSKMVLSELSGEATDTSTRVVD------------KAGPSTRVVDEPNTSETLAVIPDDEVE
                                       D V E   Q   V+ +  GE  D     V+            +     RV      S    +I DD   
Subjt:  ------------------------------VDHVREHKPQSKMVLSELSGEATDTSTRVVD------------KAGPSTRVVDEPNTSETLAVIPDDEVE

Query:  DPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG
        +P +  + ++  +K+Q  KAM  EMES+  N    LV+ P+G
Subjt:  DPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

9.8e-05

27.78

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Query:  AVYILNVVPSKSVS-ETPFELWGGHKDSLRHFRIWGCPAHVLVT--NPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLE
        AVY++N +P+  +  E+PF+   G   +    R++GC  +  +   N  KLD +S+ C+F+GY            Q +++++S +  F E
Subjt:  AVYILNVVPSKSVS-ETPFELWGGHKDSLRHFRIWGCPAHVLVT--NPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKVFVSTNATFLE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTGAGAGTGGCCTACACGCTGACTCAATAAGCCTACCATTTTGGGGACAAGATCGAGTGGGGAGCTGGGAACATAATCACACAAAATGGAATTCACTCCTTCCCGA
CTCTAGGGTAAATAGAGGTGTGTTCCCTGAAGTGGTGTCTTCGGGTCTTGAACAATGGGCCCTACCCTCTCTATGGCACGAGAAGGACTTCTGTTTGTTGGTTGGACCTC
AAACAGGTCCATCAGGTCCCACTGATAGCTCAAATAAGGGCCCTTGGGGTGGGGTGAAAGACATCTCATTCATTCTCCTACTCTCAGAGAATTCCCTTGAAGGCTCCCAC
CAGTCTCCTACCTCTAGAAGTCTTAGAGTCATACTGTCTGAAGCCCTAGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAGAACTTGTTAGTAGAGACTGCAGTGTATAT
TTTGAATGTAGTTCCCTCAAAGAGTGTTTCTGAAACACCATTTGAGCTCTGGGGAGGGCATAAAGATAGTTTACGTCATTTTAGAATTTGGGGCTGCCCTGCACATGTGC
TAGTGACAAATCCCAAGAAATTGGATTCACGTTCCAAATTATGCCTATTCGTAGGCTACCCAAAAGAAACAAGAGGTGGATACTTCTTCGATCCACAAGAAAATAAAGTG
TTTGTGTCGACAAATGCTACTTTTTTGGAAGTAGACCACGTTAGAGAACATAAGCCACAAAGTAAAATGGTGTTAAGTGAACTTTCTGGTGAAGCTACAGATACATCAAC
AAGAGTTGTTGATAAGGCTGGACCTTCAACAAGAGTTGTTGATGAACCCAATACATCTGAAACTCTAGCTGTCATACCTGATGATGAGGTCGAGGATCCATTGACCTTTA
ACCAGTCAATGAATGATGTGGATAAAGACCAGTGGTTCAAAGCTATGGACTTTGAGATGGAGTCAATGTACTTCAATCAAGTTTTGGATCTTGTAGACCAACCTGAAGGG
TAA

mRNA sequence

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Protein sequence

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MGESGLHADSISLPFWGQDRVGSWEHNHTKWNSLLPDSRVNRGVFPEVVSSGLEQWALPSLWHEKDFCLLVGPQTGPSGPTDSSNKGPWGGVKDISFILLLSENSLEGSH
QSPTSRSLRVILSEALEKFKEYKAEVENLLVETAVYILNVVPSKSVSETPFELWGGHKDSLRHFRIWGCPAHVLVTNPKKLDSRSKLCLFVGYPKETRGGYFFDPQENKV
FVSTNATFLEVDHVREHKPQSKMVLSELSGEATDTSTRVVDKAGPSTRVVDEPNTSETLAVIPDDEVEDPLTFNQSMNDVDKDQWFKAMDFEMESMYFNQVLDLVDQPEG

Lag0000784 (gene) of Sponge gourd (AG-4) v1 genome