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Lag0000803 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000803
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:16997991..16998518
RNA-Seq ExpressionLag0000803
SyntenyLag0000803
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.3e-2444.31Show/hide
Query:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKKSER----EHKRHFSSD--HGSKRDKRQRTDERG
        +Y+TRFN E LQVEG ++  +L+A   G+ D+ L  S GK  P T++E +SRAQ YMS  E   SK+       + KR  S D   GS+ +KR R+    
Subjt:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKKSER----EHKRHFSSD--HGSKRDKRQRTDERG

Query:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN
         C   Q D  +KFEKYT ++VP EQ+LMEI+N  LL  P ++ ++   R K +YCLFH DHGH+T++
Subjt:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.0e-2643.71Show/hide
Query:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG
        +Y+ RFN+E LQVEG ++  +L+A  +G+ D+ L  S GK  P T++E +SRAQ YMS  E   SK+       + KR  S D   GS+ +KR R+ ++ 
Subjt:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG

Query:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN
               D  +KFEKYTP++VP EQ+LMEI++  LL  P ++K++   R K +YCLFHRDHGH+T++
Subjt:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.3e-2442.26Show/hide
Query:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG
        +Y+ RFN E LQ+E  ++  +L+A  +G+ D+ L  S GK  P T++E +SRAQ YMS  E   SK+       + KR  S D   GS+ +KR R+ ++ 
Subjt:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG

Query:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRNY
               D  +KFEKYTP++VP EQ+LMEI++  LL  P ++K     R K +YCLFHRDH H+T++Y
Subjt:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRNY

XP_023876176.1 uncharacterized protein LOC111988620 [Quercus suber]2.1e-1939.13Show/hide
Query:  YITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKS---KKSEREHKRHFSSDHGSKRDKRQRTDERGRCRP
        YITRFN EAL ++   +   + A T GL   + L S+ K+ P+T AE + RA  YM+ E+ L++   K  +RE +     D GSKR +        R +P
Subjt:  YITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKS---KKSEREHKRHFSSDHGSKRDKRQRTDERGRCRP

Query:  DQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHST
          G    +F  +TP + P +Q+LM+I++   L  P KLKS+P  R + +YC FHRDHGH T
Subjt:  DQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHST

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]2.1e-1935.8Show/hide
Query:  ITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKKSERE------HKRHFSSDHGSKRDKRQRTDERGRC
        ITRFN E ++VE YS+   L  I  GL+  +   S+ K+  +T+ E +SRAQ Y +V+EL  +K+           KR    +    ++K  R +++G  
Subjt:  ITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKKSERE------HKRHFSSDHGSKRDKRQRTDERGRC

Query:  RPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHS
                 +F +YTP ++P+EQ+LM+IRN +LL  P+ +K  P+ RD+ +YC +HRDH H+
Subjt:  RPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHS

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128056.1e-2544.31Show/hide
Query:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKKSER----EHKRHFSSD--HGSKRDKRQRTDERG
        +Y+TRFN E LQVEG ++  +L+A   G+ D+ L  S GK  P T++E +SRAQ YMS  E   SK+       + KR  S D   GS+ +KR R+    
Subjt:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKKSER----EHKRHFSSD--HGSKRDKRQRTDERG

Query:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN
         C   Q D  +KFEKYT ++VP EQ+LMEI+N  LL  P ++ ++   R K +YCLFH DHGH+T++
Subjt:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN

A0A6J1DWY0 uncharacterized protein LOC1110252931.5e-2643.71Show/hide
Query:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG
        +Y+ RFN+E LQVEG ++  +L+A  +G+ D+ L  S GK  P T++E +SRAQ YMS  E   SK+       + KR  S D   GS+ +KR R+ ++ 
Subjt:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG

Query:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN
               D  +KFEKYTP++VP EQ+LMEI++  LL  P ++K++   R K +YCLFHRDHGH+T++
Subjt:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRN

A0A6J1DYL6 uncharacterized protein LOC1110257856.1e-2542.26Show/hide
Query:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG
        +Y+ RFN E LQ+E  ++  +L+A  +G+ D+ L  S GK  P T++E +SRAQ YMS  E   SK+       + KR  S D   GS+ +KR R+ ++ 
Subjt:  NYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKK----SEREHKRHFSSD--HGSKRDKRQRTDERG

Query:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRNY
               D  +KFEKYTP++VP EQ+LMEI++  LL  P ++K     R K +YCLFHRDH H+T++Y
Subjt:  RCRPDQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRNY

A0A6J1DZ52 uncharacterized protein LOC1110256121.7e-1943.88Show/hide
Query:  AGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEEL------LKSKKSEREHKRHFSSDHGSKRDKRQRTDERGRCRPDQGDYLKKFEKYTPSSVPQEQI
        +G++D+ L  S GK  P T+AE +SRAQ YMS EE       L+ K+++++ +R       SK +K+ R          Q D  +KFEKYTP++VP EQ+
Subjt:  AGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEEL------LKSKKSEREHKRHFSSDHGSKRDKRQRTDERGRCRPDQGDYLKKFEKYTPSSVPQEQI

Query:  LMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHST
        LMEI++  LL  P  +K+ P+ R K +YCLFHRDHGH+T
Subjt:  LMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHST

A0A7N2N9G0 Reverse transcriptase1.1e-1838.51Show/hide
Query:  YITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELL---KSKKSEREHKRHFSSDHGSKRDKRQRTDERGRCRP
        YI+RFN EAL V+   +   + A T GL+  + L S+ K+ P+T +E + RA  YM+ E+ L   + K  +RE +     D G K+ +     E  R RP
Subjt:  YITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELL---KSKKSEREHKRHFSSDHGSKRDKRQRTDERGRCRP

Query:  DQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHST
          G    +F  +TP + P +Q+LM+I++   L  P KLKS+P+ R + +YC FHRDHGH T
Subjt:  DQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATTACATAACGCGTTTTAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAACCCTAGTAGCCAT
CACAGCCGGACTGGAAGACAAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCAAACCTATGCAGAGTTCGTCTCCCGGGCACAGACATACATGAGTGTAGAGGAGT
TGCTCAAGTCAAAGAAGTCGGAACGAGAGCACAAAAGACATTTTTCATCTGACCATGGCAGTAAGAGGGACAAGAGGCAACGAACAGACGAAAGAGGTCGATGCCGACCA
GACCAAGGAGACTACTTGAAGAAGTTTGAAAAGTACACCCCTTCTTCGGTCCCACAGGAGCAGATCTTGATGGAGATACGAAATACAAATCTGCTCAATGCGCCCAGGAA
GTTGAAGTCAAACCCTGACAACAGAGACAAAAGGCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGAAACTACATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATTACATAACGCGTTTTAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAACCCTAGTAGCCAT
CACAGCCGGACTGGAAGACAAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCAAACCTATGCAGAGTTCGTCTCCCGGGCACAGACATACATGAGTGTAGAGGAGT
TGCTCAAGTCAAAGAAGTCGGAACGAGAGCACAAAAGACATTTTTCATCTGACCATGGCAGTAAGAGGGACAAGAGGCAACGAACAGACGAAAGAGGTCGATGCCGACCA
GACCAAGGAGACTACTTGAAGAAGTTTGAAAAGTACACCCCTTCTTCGGTCCCACAGGAGCAGATCTTGATGGAGATACGAAATACAAATCTGCTCAATGCGCCCAGGAA
GTTGAAGTCAAACCCTGACAACAGAGACAAAAGGCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGAAACTACATTTAG
Protein sequenceShow/hide protein sequence
MRFRCVGTFIPFNYITRFNDEALQVEGYSEGATLVAITAGLEDKRLLNSIGKSQPQTYAEFVSRAQTYMSVEELLKSKKSEREHKRHFSSDHGSKRDKRQRTDERGRCRP
DQGDYLKKFEKYTPSSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKRQYCLFHRDHGHSTRNYI