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Lag0000819 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000819
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionF-box protein
Genome locationchr4:17446555..17446998
RNA-Seq ExpressionLag0000819
SyntenyLag0000819
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017085.1 F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-3366.67Show/hide
Query:  MLCPKSPKFHRSFVA------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLS
        MLC KSPK HR+  A      E  LNNDDL LEIL+RLPIRSLLTF+ VSKRWLALISNP+FS  R  S+ P PSGIF  R  P+S AF F NL ANP  
Subjt:  MLCPKSPKFHRSFVA------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLS

Query:  APFESLNFIDQKHKIVIIQSCNG
        APFESLNF DQ++ IVI QSCNG
Subjt:  APFESLNFIDQKHKIVIIQSCNG

XP_022929085.1 F-box protein At5g07610 [Cucurbita moschata]8.1e-3367.23Show/hide
Query:  MLCPKSPKFHRSFVAELN--LNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFE
        MLC KSPK HR+  A +   LNNDDL LEIL+RLPIRSLLTF+ VSKRWLALISNP+FS  R  S+ P PSGIF  R  P+S AF F NL ANP  APFE
Subjt:  MLCPKSPKFHRSFVAELN--LNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFE

Query:  SLNFIDQKHKIVIIQSCNG
        SLNF  Q++ IVI QSCNG
Subjt:  SLNFIDQKHKIVIIQSCNG

XP_022969759.1 F-box protein At5g07610 [Cucurbita maxima]2.5e-3467.2Show/hide
Query:  MLCPKSPKFHRSFVA--------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANP
        MLC KSPK HR+F A        E  LNNDDLLLEIL+RLPIRSLLTF+ VSKRWLALISNP+FS  R  S+ P PSGIF  R  P+S AF F NL ANP
Subjt:  MLCPKSPKFHRSFVA--------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANP

Query:  LSAPFESLNFIDQKHKIVIIQSCNG
          APFESLNF DQ++ IVI QSCNG
Subjt:  LSAPFESLNFIDQKHKIVIIQSCNG

XP_023549834.1 F-box protein At5g07610 [Cucurbita pepo subsp. pepo]4.7e-3366.67Show/hide
Query:  MLCPKSPKFHRSFVA------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLS
        MLC KSPK HR+  A      E  LNN+DLLLEIL+RLPIRSLLTF+ VSKRWLALISNP+FS  R  S+ P PSGIF  R  P+S AF F NL ANP  
Subjt:  MLCPKSPKFHRSFVA------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLS

Query:  APFESLNFIDQKHKIVIIQSCNG
        APFESLNF DQ++ IVI QSCNG
Subjt:  APFESLNFIDQKHKIVIIQSCNG

XP_038877127.1 F-box protein At5g07610-like [Benincasa hispida]3.2e-3767.46Show/hide
Query:  MLCPKSPKFHRSFVAELN---------LNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIAN
        MLC KS K HR+  A L          LNNDDL +EILLRLPI+SLLTF+ VSKRWL+LISNP+FSH R TSH  TPSGIFFPR  P SPAF F NL AN
Subjt:  MLCPKSPKFHRSFVAELN---------LNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIAN

Query:  PLSAPFESLNFIDQKHKIVIIQSCNG
        P  APFESLNF D+KH  VI+QSCNG
Subjt:  PLSAPFESLNFIDQKHKIVIIQSCNG

TrEMBL top hitse value%identityAlignment
A0A1S3ASN6 F-box protein At5g07610-like5.7e-3266.09Show/hide
Query:  SPKFHR-SFVAELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTS--HLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFESLNF
        S K HR S  AEL L+NDDL +EILLRLPIRSLL F+ VSKRWL++ISNPNFSH R  S  H PTPSGIFFPRL   SP+F F N   +P   PFESLNF
Subjt:  SPKFHR-SFVAELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTS--HLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFESLNF

Query:  IDQKHKIVIIQSCNG
         D+KH+ +I+QSCNG
Subjt:  IDQKHKIVIIQSCNG

A0A5A7TJJ2 F-box protein5.7e-3266.09Show/hide
Query:  SPKFHR-SFVAELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTS--HLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFESLNF
        S K HR S  AEL L+NDDL +EILLRLPIRSLL F+ VSKRWL++ISNPNFSH R  S  H PTPSGIFFPRL   SP+F F N   +P   PFESLNF
Subjt:  SPKFHR-SFVAELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTS--HLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFESLNF

Query:  IDQKHKIVIIQSCNG
         D+KH+ +I+QSCNG
Subjt:  IDQKHKIVIIQSCNG

A0A6J1DRL4 F-box protein At5g076105.9e-2958.68Show/hide
Query:  MLCPKSPKFHRSFVAELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPN-SPAFGFFNLIANPLSAPFES
        MLC K+PK    F AE  +++ DLLL ILLRLPIRSLL F+ VSKRWL+LISNP+FSH R +SH P PSGIF PR CPN SP + F +L  N   APFES
Subjt:  MLCPKSPKFHRSFVAELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPN-SPAFGFFNLIANPLSAPFES

Query:  LNFIDQKH---KIVIIQSCNG
        ++F ++K     + I+QSCNG
Subjt:  LNFIDQKH---KIVIIQSCNG

A0A6J1ET91 F-box protein At5g076103.9e-3367.23Show/hide
Query:  MLCPKSPKFHRSFVAELN--LNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFE
        MLC KSPK HR+  A +   LNNDDL LEIL+RLPIRSLLTF+ VSKRWLALISNP+FS  R  S+ P PSGIF  R  P+S AF F NL ANP  APFE
Subjt:  MLCPKSPKFHRSFVAELN--LNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFE

Query:  SLNFIDQKHKIVIIQSCNG
        SLNF  Q++ IVI QSCNG
Subjt:  SLNFIDQKHKIVIIQSCNG

A0A6J1I3L0 F-box protein At5g076101.2e-3467.2Show/hide
Query:  MLCPKSPKFHRSFVA--------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANP
        MLC KSPK HR+F A        E  LNNDDLLLEIL+RLPIRSLLTF+ VSKRWLALISNP+FS  R  S+ P PSGIF  R  P+S AF F NL ANP
Subjt:  MLCPKSPKFHRSFVA--------ELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANP

Query:  LSAPFESLNFIDQKHKIVIIQSCNG
          APFESLNF DQ++ IVI QSCNG
Subjt:  LSAPFESLNFIDQKHKIVIIQSCNG

SwissProt top hitse value%identityAlignment
Q9C6J3 Putative F-box protein At1g508708.2e-0445.1Show/hide
Query:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFF
        DL+LEILLRLP++S+L F  VSK WL+  ++P F++         PS + F
Subjt:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFF

Q9FLS0 F-box protein At5g076102.2e-0940.4Show/hide
Query:  DDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFES---LNFIDQKHKIVIIQSCNG
        DD+L++IL  LPI++LL F+ VSKRWL+LI+NP FS+    S+ P P   FF    P    + F +L  +  +    S   L F D +  ++I+QS NG
Subjt:  DDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFES---LNFIDQKHKIVIIQSCNG

Arabidopsis top hitse value%identityAlignment
AT1G47300.1 F-box family protein1.7e-0442Show/hide
Query:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIF
        +L+LEI+LRLP +S+  F  VSK+W +++S P F+    TS    P  +F
Subjt:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIF

AT1G50870.1 F-box and associated interaction domains-containing protein5.8e-0545.1Show/hide
Query:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFF
        DL+LEILLRLP++S+L F  VSK WL+  ++P F++         PS + F
Subjt:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFF

AT4G19940.1 F-box and associated interaction domains-containing protein2.2e-0436.36Show/hide
Query:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFES
        DL++EIL RLP +SL+ F+ VSK W +LI + NF++      L +P  +F   +C +S        +   LS+P +S
Subjt:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFES

AT5G07610.1 F-box family protein1.6e-1040.4Show/hide
Query:  DDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFES---LNFIDQKHKIVIIQSCNG
        DD+L++IL  LPI++LL F+ VSKRWL+LI+NP FS+    S+ P P   FF    P    + F +L  +  +    S   L F D +  ++I+QS NG
Subjt:  DDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFES---LNFIDQKHKIVIIQSCNG

AT5G65850.1 F-box and associated interaction domains-containing protein2.2e-0432.94Show/hide
Query:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFESLNFIDQKH
        D+++EILLRLP +S+ T   VSK W+++I   +F+    T  L  P  +F    C       FF+  +  L  P+E+ + I  K+
Subjt:  DLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFESLNFIDQKH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTGCCCCAAATCACCCAAATTCCACCGCTCCTTTGTTGCCGAACTAAATCTCAACAATGACGATCTTTTACTCGAGATCCTTCTCCGACTACCCATCCGATCACT
TCTAACATTCGAATATGTCTCCAAACGCTGGCTTGCCCTAATTTCCAACCCCAATTTCTCTCACCATCGATGCACTTCTCATCTGCCCACTCCTTCTGGCATATTCTTCC
CCCGTCTGTGCCCTAATTCCCCTGCATTCGGTTTCTTCAATTTGATCGCAAATCCCTTGTCTGCTCCGTTCGAATCCCTTAATTTCATCGACCAAAAGCACAAAATTGTG
ATCATCCAGTCCTGTAACGGCGAACGAATACACCGGAATCGGGGAGGAGGAGCCCCTCCTCTCCCTTCCGTTTCAGATCCGGAGGGGACTCCTCCCCAAAGCTCCCCTAT
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTGCCCCAAATCACCCAAATTCCACCGCTCCTTTGTTGCCGAACTAAATCTCAACAATGACGATCTTTTACTCGAGATCCTTCTCCGACTACCCATCCGATCACT
TCTAACATTCGAATATGTCTCCAAACGCTGGCTTGCCCTAATTTCCAACCCCAATTTCTCTCACCATCGATGCACTTCTCATCTGCCCACTCCTTCTGGCATATTCTTCC
CCCGTCTGTGCCCTAATTCCCCTGCATTCGGTTTCTTCAATTTGATCGCAAATCCCTTGTCTGCTCCGTTCGAATCCCTTAATTTCATCGACCAAAAGCACAAAATTGTG
ATCATCCAGTCCTGTAACGGCGAACGAATACACCGGAATCGGGGAGGAGGAGCCCCTCCTCTCCCTTCCGTTTCAGATCCGGAGGGGACTCCTCCCCAAAGCTCCCCTAT
TTAA
Protein sequenceShow/hide protein sequence
MLCPKSPKFHRSFVAELNLNNDDLLLEILLRLPIRSLLTFEYVSKRWLALISNPNFSHHRCTSHLPTPSGIFFPRLCPNSPAFGFFNLIANPLSAPFESLNFIDQKHKIV
IIQSCNGERIHRNRGGGAPPLPSVSDPEGTPPQSSPI