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Lag0000824 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000824
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:17518268..17518984
RNA-Seq ExpressionLag0000824
SyntenyLag0000824
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]1.2e-0439.56Show/hide
Query:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARV
        E + + WENFNLT E E+  V VD +    T       LIGK+L+ R +  +VM       W +  GL V +IG NLF+F   S+ E  RV
Subjt:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARV

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.0e-0724.89Show/hide
Query:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIP-TGLIVEKIGSNLFLFNLRSEEELARVLR---
        MA  ++L +W+NF LTSE +   V++D  A   T   +  SLI K+L+ R I   V+  T K  W +      V+ IG N+FLFN     +  R+LR   
Subjt:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIP-TGLIVEKIGSNLFLFNLRSEEELARVLR---

Query:  ----------------------------------------------------------------------CL----------------KVNLGEPMGSCW
                                                                              CL                K+NL  PMG CW
Subjt:  ----------------------------------------------------------------------CL----------------KVNLGEPMGSCW

Query:  TSIRYENLPKICSFYGMIGHNVKDC
          I+YE LP      G + H +KDC
Subjt:  TSIRYENLPKICSFYGMIGHNVKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.5e-1326.22Show/hide
Query:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVL--------
        E++L  W+ F LTSE +   ++VD  A  +    +  SL+GK+LA RII  DV+ R     W +   L VE IG NLFLF+   E ++ RV+        
Subjt:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVL--------

Query:  ---------------------------------------------------------------------------------RCLKVNLGEPMGSCWTSIR
                                                                                         R +K+N+  PMG CW  I+
Subjt:  ---------------------------------------------------------------------------------RCLKVNLGEPMGSCWTSIR

Query:  YENLPKICSFYGMIGHNVKDCGSYY
        YE LP  C F G+IGH+  DC + Y
Subjt:  YENLPKICSFYGMIGHNVKDCGSYY

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.7e-0638.82Show/hide
Query:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLI-VEKIGSNLFLFN
        MA  D+L +W+NF LTSE E T ++VD  A   T + +   L+GK+   R I   VM  T ++ W +      V+ +G NLFLF+
Subjt:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLI-VEKIGSNLFLFN

XP_030941773.1 uncharacterized protein LOC115966744 [Quercus lobata]2.0e-0723.74Show/hide
Query:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVLR-------
        ED+++  EN  LTSE E  ++ +  +           SLIGK L  +         T +  W +  G+ + ++GSNLF F  ++E EL RV +       
Subjt:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVLR-------

Query:  -------------CLKVNLGEPMG------------------------------------------SCWTSIRYENLPKICSFYGMIGHNVKDCGSYY
                      +   +G  MG                                            WT+ RYE LP  C   G++GH++K C +YY
Subjt:  -------------CLKVNLGEPMG------------------------------------------SCWTSIRYENLPKICSFYGMIGHNVKDCGSYY

TrEMBL top hitse value%identityAlignment
A0A2N9IG44 CCHC-type domain-containing protein9.2e-0624.34Show/hide
Query:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVLR----
        MA + +L  W  F+LT E E+   +V+      +  +    L+GK++  ++   +V+  T    W    G+    I  NLF F   +E E  RVL     
Subjt:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVLR----

Query:  -----------------------------------CLKVNLG---------------EPMGSCWTSIRYENLPKICSFYGMIGHNVKDC
                                            L+V L                  +G  W S RYE LP IC   G+IGH  +DC
Subjt:  -----------------------------------CLKVNLG---------------EPMGSCWTSIRYENLPKICSFYGMIGHNVKDC

A0A6J1BSZ1 uncharacterized protein LOC1110054819.9e-0824.89Show/hide
Query:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIP-TGLIVEKIGSNLFLFNLRSEEELARVLR---
        MA  ++L +W+NF LTSE +   V++D  A   T   +  SLI K+L+ R I   V+  T K  W +      V+ IG N+FLFN     +  R+LR   
Subjt:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIP-TGLIVEKIGSNLFLFNLRSEEELARVLR---

Query:  ----------------------------------------------------------------------CL----------------KVNLGEPMGSCW
                                                                              CL                K+NL  PMG CW
Subjt:  ----------------------------------------------------------------------CL----------------KVNLGEPMGSCW

Query:  TSIRYENLPKICSFYGMIGHNVKDC
          I+YE LP      G + H +KDC
Subjt:  TSIRYENLPKICSFYGMIGHNVKDC

A0A6J1DU55 uncharacterized protein LOC1110231357.0e-1426.22Show/hide
Query:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVL--------
        E++L  W+ F LTSE +   ++VD  A  +    +  SL+GK+LA RII  DV+ R     W +   L VE IG NLFLF+   E ++ RV+        
Subjt:  EDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVL--------

Query:  ---------------------------------------------------------------------------------RCLKVNLGEPMGSCWTSIR
                                                                                         R +K+N+  PMG CW  I+
Subjt:  ---------------------------------------------------------------------------------RCLKVNLGEPMGSCWTSIR

Query:  YENLPKICSFYGMIGHNVKDCGSYY
        YE LP  C F G+IGH+  DC + Y
Subjt:  YENLPKICSFYGMIGHNVKDCGSYY

A0A6J1DX30 uncharacterized protein LOC1110248748.3e-0738.82Show/hide
Query:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLI-VEKIGSNLFLFN
        MA  D+L +W+NF LTSE E T ++VD  A   T + +   L+GK+   R I   VM  T ++ W +      V+ +G NLFLF+
Subjt:  MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLI-VEKIGSNLFLFN

A0A7N2LHE8 Uncharacterized protein5.4e-0623.6Show/hide
Query:  LEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIG-KILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVLR-----
        +E M   WE  +LT    S     D         +MG  L+  K    R++  + + +TFK  W    G  V  +G++L LF+   E ++ARV++     
Subjt:  LEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIG-KILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVLR-----

Query:  ----CLKVNL----------------------GEPMGSCWTSIRYENLPKICSFYGMIGHNVKDCGSYYRGEGSSEQK
             + + +                      G  +G  W   +YE LP IC  +G + H+ ++C  + R EG+ +++
Subjt:  ----CLKVNL----------------------GEPMGSCWTSIRYENLPKICSFYGMIGHNVKDCGSYYRGEGSSEQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTTGAAGATATGTTGAATCAATGGGAGAATTTCAACCTAACAAGTGAGGCGGAAAGCACGGTGGTGGAAGTGGATCGACAGGCGGCTCTAGTCACGACAAATTT
GATGGGTGCAAGCTTGATTGGGAAGATTCTAGCACCTCGAATTATTTTGGGCGACGTCATGGGGAGGACTTTCAAATCTGAGTGGAACATCCCCACTGGCCTTATTGTGG
AAAAGATTGGATCTAATTTGTTCCTATTTAATCTCCGGTCTGAGGAGGAACTTGCTCGTGTTCTACGATGCCTTAAAGTTAATCTTGGTGAGCCAATGGGTAGTTGCTGG
ACGTCCATTCGGTATGAGAATCTCCCGAAGATTTGCTCTTTCTATGGCATGATCGGACACAATGTGAAAGATTGCGGTTCGTACTATCGAGGGGAGGGATCTTCGGAACA
AAAGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTTGAAGATATGTTGAATCAATGGGAGAATTTCAACCTAACAAGTGAGGCGGAAAGCACGGTGGTGGAAGTGGATCGACAGGCGGCTCTAGTCACGACAAATTT
GATGGGTGCAAGCTTGATTGGGAAGATTCTAGCACCTCGAATTATTTTGGGCGACGTCATGGGGAGGACTTTCAAATCTGAGTGGAACATCCCCACTGGCCTTATTGTGG
AAAAGATTGGATCTAATTTGTTCCTATTTAATCTCCGGTCTGAGGAGGAACTTGCTCGTGTTCTACGATGCCTTAAAGTTAATCTTGGTGAGCCAATGGGTAGTTGCTGG
ACGTCCATTCGGTATGAGAATCTCCCGAAGATTTGCTCTTTCTATGGCATGATCGGACACAATGTGAAAGATTGCGGTTCGTACTATCGAGGGGAGGGATCTTCGGAACA
AAAGCACTAG
Protein sequenceShow/hide protein sequence
MALEDMLNQWENFNLTSEAESTVVEVDRQAALVTTNLMGASLIGKILAPRIILGDVMGRTFKSEWNIPTGLIVEKIGSNLFLFNLRSEEELARVLRCLKVNLGEPMGSCW
TSIRYENLPKICSFYGMIGHNVKDCGSYYRGEGSSEQKH