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Lag0000831 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000831
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr4:17792253..17793892
RNA-Seq ExpressionLag0000831
SyntenyLag0000831
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17996.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-0534.78Show/hide
Query:  APRSLSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEHDSVVIDMYHRPRGQRNWFFIFPFSSHEHWVIHNLFDTVYAFENALGLNI
        A   L+SV ++   D  L+  ELVD+W  +  KG +IKL +EKAFD+    D   +D   + +G                     F  +Y FE A GL+I
Subjt:  APRSLSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEHDSVVIDMYHRPRGQRNWFFIFPFSSHEHWVIHNLFDTVYAFENALGLNI

Query:  NPSKSEIMGINIEEE
        N SKSE++GI+I ++
Subjt:  NPSKSEIMGINIEEE

TYK27680.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.3e-0431.97Show/hide
Query:  LSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS-EHDSVVIDMYHRPRGQRNW---------FFIF----PFSSHEHWVIHNLFDTVY
        L+ V  +  +D  L+++E+VD WK K+ KG ++KLDIEK+FD+ + E    ++   + P   RNW         + +F    P    +   + NL   + 
Subjt:  LSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS-EHDSVVIDMYHRPRGQRNW---------FFIF----PFSSHEHWVIHNLFDTVY

Query:  AFENALGLNINPSKSEIMGINI
         FE A GL IN   S +  IN+
Subjt:  AFENALGLNINPSKSEIMGINI

XP_022145825.1 uncharacterized protein LOC111015185 [Momordica charantia]4.0e-0631.54Show/hide
Query:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS--------EHDSVVIDMYHR---PRGQRNWFFIFP-------------------FSSHEHWVIHN
        D  L+ NEL++EW  ++ KG++IKLDIEKAFD           +    V+D++ R      + N    F                    FS+++ + + N
Subjt:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS--------EHDSVVIDMYHR---PRGQRNWFFIFP-------------------FSSHEHWVIHN

Query:  LFDTVYAFENALGLNINPSKSEIMGINIEE
        L   + +FE A  LN+N  KSEI+GIN+ +
Subjt:  LFDTVYAFENALGLNINPSKSEIMGINIEE

XP_028112207.1 uncharacterized protein LOC114310430 [Camellia sinensis]8.3e-0434.91Show/hide
Query:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEHDSVVIDMYHRPR---GQRNWFFIFP---FSSHEHWVIHNLFDTVYAFENALGLNINPSKSEIM
        D  LV NE+++E++G   +G + K+D EKA+D    H   VI+ +   R   G  +  F      FSS+E   + +L   +  FE   GL +N +KS ++
Subjt:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEHDSVVIDMYHRPR---GQRNWFFIFP---FSSHEHWVIHNLFDTVYAFENALGLNINPSKSEIM

Query:  GINIEE
        GIN+EE
Subjt:  GINIEE

TrEMBL top hitse value%identityAlignment
A0A438I6W1 Putative ribonuclease H protein8.9e-0433.1Show/hide
Query:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEH--DSVVIDMYHRPRGQRNWF---FIFPFSSHEHWVIHNLFDTVYAFENALGLNINPSKSEIMG
        D  L+ NE+VDE K    +G + K+D EKA+D  S    D V+      PR  R W     IF FSS     + +L   +  F +  GL +N  KS I G
Subjt:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEH--DSVVIDMYHRPRGQRNWF---FIFPFSSHEHWVIHNLFDTVYAFENALGLNINPSKSEIMG

Query:  INIEEE--TPLYRKIWVQSWGVAKHLPWSSFEWQSQALLFLV
        IN+ +     L   +  ++ G    LP SS  W+ Q  + L+
Subjt:  INIEEE--TPLYRKIWVQSWGVAKHLPWSSFEWQSQALLFLV

A0A5D3D3Q8 Reverse transcriptase2.1e-0534.78Show/hide
Query:  APRSLSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEHDSVVIDMYHRPRGQRNWFFIFPFSSHEHWVIHNLFDTVYAFENALGLNI
        A   L+SV ++   D  L+  ELVD+W  +  KG +IKL +EKAFD+    D   +D   + +G                     F  +Y FE A GL+I
Subjt:  APRSLSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEHDSVVIDMYHRPRGQRNWFFIFPFSSHEHWVIHNLFDTVYAFENALGLNI

Query:  NPSKSEIMGINIEEE
        N SKSE++GI+I ++
Subjt:  NPSKSEIMGINIEEE

A0A5D3DWQ9 LINE-1 retrotransposable element ORF2 protein4.0e-0431.97Show/hide
Query:  LSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS-EHDSVVIDMYHRPRGQRNW---------FFIF----PFSSHEHWVIHNLFDTVY
        L+ V  +  +D  L+++E+VD WK K+ KG ++KLDIEK+FD+ + E    ++   + P   RNW         + +F    P    +   + NL   + 
Subjt:  LSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS-EHDSVVIDMYHRPRGQRNW---------FFIF----PFSSHEHWVIHNLFDTVY

Query:  AFENALGLNINPSKSEIMGINI
         FE A GL IN   S +  IN+
Subjt:  AFENALGLNINPSKSEIMGINI

A0A6J1CVL8 uncharacterized protein LOC1110151851.9e-0631.54Show/hide
Query:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS--------EHDSVVIDMYHR---PRGQRNWFFIFP-------------------FSSHEHWVIHN
        D  L+ NEL++EW  ++ KG++IKLDIEKAFD           +    V+D++ R      + N    F                    FS+++ + + N
Subjt:  DTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQS--------EHDSVVIDMYHR---PRGQRNWFFIFP-------------------FSSHEHWVIHN

Query:  LFDTVYAFENALGLNINPSKSEIMGINIEE
        L   + +FE A  LN+N  KSEI+GIN+ +
Subjt:  LFDTVYAFENALGLNINPSKSEIMGINIEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATCACTGAAATTGTCCATGACAGCAGCCTCACATATTCGGAAATTGAAAGTGATTTTCTTGCTTTCTTCACCAAACTCTGCACCAAGAAGCCTGTCATCAGTCCC
TTCCCAAACGGATTCTGACACTTTTCTTGTTGACAACGAGCTAGTGGATGAGTGGAAGGGGAAAAGGAATAAAGGCTCTCTTATCAAGTTAGACATTGAAAAGGCTTTTG
ATAGCCAAAGTGAACATGATTCAGTGGTAATTGACATGTATCATCGACCAAGAGGCCAGAGGAATTGGTTTTTTATTTTTCCTTTCTCCTCTCATGAACATTGGGTGATT
CATAACTTATTTGATACGGTCTATGCTTTCGAGAATGCTTTGGGTCTCAATATCAATCCTAGCAAATCTGAAATTATGGGAATCAATATTGAGGAAGAAACTCCACTTTA
CCGCAAAATTTGGGTGCAAAGTTGGGGGGTGGCCAAACACCTACCTTGGTCTTCCTTTGAATGGCAATCCCAAGCATTGCTCTTTTTGGTTCCCCATAGTGGGAAAAGAT
TCAAAGAAGACTGGATGGTTGGAACAATTCACACATTTCCAAAGGAGGAAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTATCACTGAAATTGTCCATGACAGCAGCCTCACATATTCGGAAATTGAAAGTGATTTTCTTGCTTTCTTCACCAAACTCTGCACCAAGAAGCCTGTCATCAGTCCC
TTCCCAAACGGATTCTGACACTTTTCTTGTTGACAACGAGCTAGTGGATGAGTGGAAGGGGAAAAGGAATAAAGGCTCTCTTATCAAGTTAGACATTGAAAAGGCTTTTG
ATAGCCAAAGTGAACATGATTCAGTGGTAATTGACATGTATCATCGACCAAGAGGCCAGAGGAATTGGTTTTTTATTTTTCCTTTCTCCTCTCATGAACATTGGGTGATT
CATAACTTATTTGATACGGTCTATGCTTTCGAGAATGCTTTGGGTCTCAATATCAATCCTAGCAAATCTGAAATTATGGGAATCAATATTGAGGAAGAAACTCCACTTTA
CCGCAAAATTTGGGTGCAAAGTTGGGGGGTGGCCAAACACCTACCTTGGTCTTCCTTTGAATGGCAATCCCAAGCATTGCTCTTTTTGGTTCCCCATAGTGGGAAAAGAT
TCAAAGAAGACTGGATGGTTGGAACAATTCACACATTTCCAAAGGAGGAAGACTAA
Protein sequenceShow/hide protein sequence
MLSLKLSMTAASHIRKLKVIFLLSSPNSAPRSLSSVPSQTDSDTFLVDNELVDEWKGKRNKGSLIKLDIEKAFDSQSEHDSVVIDMYHRPRGQRNWFFIFPFSSHEHWVI
HNLFDTVYAFENALGLNINPSKSEIMGINIEEETPLYRKIWVQSWGVAKHLPWSSFEWQSQALLFLVPHSGKRFKEDWMVGTIHTFPKEED