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Lag0000865 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000865
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed DNA polymerase
Genome locationchr4:18476983..18482411
RNA-Seq ExpressionLag0000865
SyntenyLag0000865
Gene Ontology termsGO:0016740 - transferase activity (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PIM97577.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]1.1e-5458.15Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLSRL+ P+   E + I+  FPDEQL AI   V  DVPWYADI N+L  G+ P D+  +QKKKF  D + ++WD+PF++KQ  D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  +ILEQCH S YGGHF G +TA KIL  GFFWP LFKDAH F   CD CQR GN+  R EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

PIN02788.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]5.0e-5557.61Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLS+L+ P+   E + IS  FPDEQL AI   V  DVPWYADI N L  G+ P D+  +QKKKF  D + ++WD+PF++KQC D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  ++LEQCH S YGGHF G KTA KIL  GF+WP LFKDAH F   CD CQR GN+    EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

PIN22487.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]1.9e-5457.61Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLSRL+ P+   E + I+  FPDEQL AI   V  +VPWYADI N+L  G+ P D+  +QKKKF  D + ++WD+PF++KQ  D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  +ILEQCH S YGGHF G +TA KIL  GFFWP LFKDAH F   CD CQR GN+  R EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

PIN22518.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]1.9e-5457.61Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLSRL+ P+   E + I+  FPDEQL AI   V  +VPWYADI N+L  G+ P D+  +QKKKF  D + ++WD+PF++KQ  D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  +ILEQCH S YGGHF G +TA KIL  GFFWP LFKDAH F   CD CQR GN+  R EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

XP_039145519.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120282734 [Dioscorea cayenensis subsp. rotundata]9.5e-5456.45Show/hide
Query:  LRDKDKKGSENVIADHLSRLDP--PSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCS
        L  +DKKG+ENV+ADHLSRL      +   + AI+ AFPDEQL  I      D PWYAD  N+LV G+ P D+ ++QKKKF  D + ++WDEPF+YK+C+
Subjt:  LRDKDKKGSENVIADHLSRLDP--PSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCS

Query:  DGIIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        DGI+R C+  DEA+++L  CH SSYGGH S  KTA KIL  GF+WPTLFKD   F   CD CQR GN+  R EMPL YILEVE+FD
Subjt:  DGIIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

TrEMBL top hitse value%identityAlignment
A0A2G9FWY3 Reverse transcriptase5.4e-5558.15Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLSRL+ P+   E + I+  FPDEQL AI   V  DVPWYADI N+L  G+ P D+  +QKKKF  D + ++WD+PF++KQ  D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  +ILEQCH S YGGHF G +TA KIL  GFFWP LFKDAH F   CD CQR GN+  R EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

A0A2G9GBU9 DNA-directed DNA polymerase2.4e-5557.61Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLS+L+ P+   E + IS  FPDEQL AI   V  DVPWYADI N L  G+ P D+  +QKKKF  D + ++WD+PF++KQC D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  ++LEQCH S YGGHF G KTA KIL  GF+WP LFKDAH F   CD CQR GN+    EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

A0A2G9HYA0 Reverse transcriptase9.3e-5557.61Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLSRL+ P+   E + I+  FPDEQL AI   V  +VPWYADI N+L  G+ P D+  +QKKKF  D + ++WD+PF++KQ  D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  +ILEQCH S YGGHF G +TA KIL  GFFWP LFKDAH F   CD CQR GN+  R EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

A0A2G9HYD8 Reverse transcriptase9.3e-5557.61Show/hide
Query:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG
        L  +D+KG+EN IADHLSRL+ P+   E + I+  FPDEQL AI   V  +VPWYADI N+L  G+ P D+  +QKKKF  D + ++WD+PF++KQ  D 
Subjt:  LRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDG

Query:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        I+R CV   E  +ILEQCH S YGGHF G +TA KIL  GFFWP LFKDAH F   CD CQR GN+  R EMPL  ILEVELFD
Subjt:  IIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

A0A2G9I815 DNA-directed DNA polymerase3.9e-5355.26Show/hide
Query:  CTHRVRLRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMY
        C  +  L  +D+KG+EN IADHLSRL+ P+   E   I+  FPDEQL AI   V  DV WYADI N+L  G+ P D+  +QKKKF  D + ++WD+PF++
Subjt:  CTHRVRLRDKDKKGSENVIADHLSRLDPPSSLLEQSAISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMY

Query:  KQCSDGIIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        KQ  D I+R CV   E  +ILEQCH S  GGHF G +TA KIL  GFFWP LFKDA+ F  +CD CQR GN+  R EMPL  ILEVELFD
Subjt:  KQCSDGIIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

SwissProt top hitse value%identityAlignment
P92516 Uncharacterized mitochondrial protein AtMg007506.5e-1363.27Show/hide
Query:  ILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        +L  GF+WPT FKDAH F   CDACQR+GN   R+EMP  +ILEVE+FD
Subjt:  ILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD

Arabidopsis top hitse value%identityAlignment
ATMG00750.1 GAG/POL/ENV polyprotein4.6e-1463.27Show/hide
Query:  ILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD
        +L  GF+WPT FKDAH F   CDACQR+GN   R+EMP  +ILEVE+FD
Subjt:  ILYCGFFWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGATGCGGCAGACTCACAGCGTCTCGACGCTGTGATAGGAAGCGTCCCGACGCTATCGCTTTTCCTTTTCAGACACGCGCGTTTTGGGAACTCTTGATTTTGGG
ACTTTTGGAGCCGACTTTAGAGCAAAAAGAGGACAGAATTGAGCTGAAGCAAAGAGGACTAGTTGGAAATCAACCCATTGCTGGTGGGGATCGTGACGGGGACGTTCGAT
CATCCTCTTCTTCTTCTTCTCTTTCGATTGGTGGCGGTGGGATCCACAGGTTTAACAAATCATCGGGGAAAACTGGGAAGGCAGGATATGGTGCTGCTGGTTGTTCTTCC
CCAAGCACTTCCACTGCAACATCCACAATTACCTTTTGCAAAATCTCTATAACTTCAGCCTGTTGTTGCCTTCTCAATCTTTTGGCCTCTCTCTCTTCAGGTGTTCTTCT
TCTTTTCGTTTTCTTCTTCGGTGCCTCAGGTGTCACTGGCACTTATTCTTCTTCAACCTCCCTTTCTCTTCTACTCCTCGCCTTTGCCATTTTAGACTTAAAGCATTTTT
GCACTCACAGAGTTCGACTTAGAGATAAAGACAAGAAGGGATCAGAAAATGTCATTGCAGATCATTTGTCTCGTCTTGATCCACCATCATCTTTGTTGGAGCAATCTGCC
ATTTCATATGCTTTTCCAGATGAACAACTTTTTGCTATTGAGGTAAAGGTAGTCAGGGATGTCCCTTGGTATGCTGATATTGCCAACTTTTTGGTAAAGGGAGTTACTCC
TATTGACATGGATTGGAGGCAGAAGAAAAAGTTTAAGCATGATGCAAAATTTTTCTATTGGGATGAGCCATTTATGTATAAGCAATGCTCTGACGGTATTATTCGTTGGT
GTGTTTCAGGTGATGAAGCAAAGGAAATCCTGGAGCAATGTCACTTTTCGTCGTATGGAGGCCATTTCAGCGGTCAAAAGACAGCTATGAAGATTCTGTATTGTGGATTC
TTCTGGCCTACCTTATTTAAGGATGCCCATTGGTTTTACAAGCAATGTGATGCTTGCCAAAGGAGAGGAAATTTAGGACCTCGAGATGAAATGCCTCTTATTTACATTTT
AGAAGTTGAATTATTCGATGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGATGCGGCAGACTCACAGCGTCTCGACGCTGTGATAGGAAGCGTCCCGACGCTATCGCTTTTCCTTTTCAGACACGCGCGTTTTGGGAACTCTTGATTTTGGG
ACTTTTGGAGCCGACTTTAGAGCAAAAAGAGGACAGAATTGAGCTGAAGCAAAGAGGACTAGTTGGAAATCAACCCATTGCTGGTGGGGATCGTGACGGGGACGTTCGAT
CATCCTCTTCTTCTTCTTCTCTTTCGATTGGTGGCGGTGGGATCCACAGGTTTAACAAATCATCGGGGAAAACTGGGAAGGCAGGATATGGTGCTGCTGGTTGTTCTTCC
CCAAGCACTTCCACTGCAACATCCACAATTACCTTTTGCAAAATCTCTATAACTTCAGCCTGTTGTTGCCTTCTCAATCTTTTGGCCTCTCTCTCTTCAGGTGTTCTTCT
TCTTTTCGTTTTCTTCTTCGGTGCCTCAGGTGTCACTGGCACTTATTCTTCTTCAACCTCCCTTTCTCTTCTACTCCTCGCCTTTGCCATTTTAGACTTAAAGCATTTTT
GCACTCACAGAGTTCGACTTAGAGATAAAGACAAGAAGGGATCAGAAAATGTCATTGCAGATCATTTGTCTCGTCTTGATCCACCATCATCTTTGTTGGAGCAATCTGCC
ATTTCATATGCTTTTCCAGATGAACAACTTTTTGCTATTGAGGTAAAGGTAGTCAGGGATGTCCCTTGGTATGCTGATATTGCCAACTTTTTGGTAAAGGGAGTTACTCC
TATTGACATGGATTGGAGGCAGAAGAAAAAGTTTAAGCATGATGCAAAATTTTTCTATTGGGATGAGCCATTTATGTATAAGCAATGCTCTGACGGTATTATTCGTTGGT
GTGTTTCAGGTGATGAAGCAAAGGAAATCCTGGAGCAATGTCACTTTTCGTCGTATGGAGGCCATTTCAGCGGTCAAAAGACAGCTATGAAGATTCTGTATTGTGGATTC
TTCTGGCCTACCTTATTTAAGGATGCCCATTGGTTTTACAAGCAATGTGATGCTTGCCAAAGGAGAGGAAATTTAGGACCTCGAGATGAAATGCCTCTTATTTACATTTT
AGAAGTTGAATTATTCGATGGATGA
Protein sequenceShow/hide protein sequence
MRRCGRLTASRRCDRKRPDAIAFPFQTRAFWELLILGLLEPTLEQKEDRIELKQRGLVGNQPIAGGDRDGDVRSSSSSSSLSIGGGGIHRFNKSSGKTGKAGYGAAGCSS
PSTSTATSTITFCKISITSACCCLLNLLASLSSGVLLLFVFFFGASGVTGTYSSSTSLSLLLLAFAILDLKHFCTHRVRLRDKDKKGSENVIADHLSRLDPPSSLLEQSA
ISYAFPDEQLFAIEVKVVRDVPWYADIANFLVKGVTPIDMDWRQKKKFKHDAKFFYWDEPFMYKQCSDGIIRWCVSGDEAKEILEQCHFSSYGGHFSGQKTAMKILYCGF
FWPTLFKDAHWFYKQCDACQRRGNLGPRDEMPLIYILEVELFDG