; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000871 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000871
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein-serine/threonine phosphatase
Genome locationchr4:18588843..18592521
RNA-Seq ExpressionLag0000871
SyntenyLag0000871
Gene Ontology termsGO:0006369 - termination of RNA polymerase II transcription (biological process)
GO:0006378 - mRNA polyadenylation (biological process)
GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
GO:0106306 - protein serine/threonine phosphatase activity (molecular function)
GO:0106307 - protein serine/threonine phosphatase activity (molecular function)
InterPro domainsIPR006811 - RNA polymerase II subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137380.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus]3.8e-6298.36Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DGSFDVVFTFEEKVFDMVIE L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL

XP_008446784.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo]3.8e-6298.36Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DGSFDVVFTFEEKVFDMVIE L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL

XP_022997876.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima]1.9e-6197.54Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DG FDVVFTFEEKVFDMVIE L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL

XP_038895501.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 [Benincasa hispida]2.2e-6277.25Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGLGYYCW-LLDLEAVGNL--KDSEVAEWADLSLILDPIRLSQTVDSW
        DGSFDVVFTFEEKVFDMVIE L      L+    + NL  KD+         LI D  +  +  +SW
Subjt:  DGSFDVVFTFEEKVFDMVIEGLGYYCW-LLDLEAVGNL--KDSEVAEWADLSLILDPIRLSQTVDSW

XP_038895502.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Benincasa hispida]1.9e-6198.33Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DGSFDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

TrEMBL top hitse value%identityAlignment
A0A0A0LQ65 Protein-serine/threonine phosphatase8.3e-6399.17Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEG
        DGSFDVVFTFEEKVFDMVIEG
Subjt:  DGSFDVVFTFEEKVFDMVIEG

A0A1S3BFX9 Protein-serine/threonine phosphatase1.8e-6298.36Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DGSFDVVFTFEEKVFDMVIE L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL

A0A6J1C6C8 Protein-serine/threonine phosphatase1.6e-6196.72Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNA VKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DGSFDVVF+FEEKVFDMVIE L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL

A0A6J1G9U0 Protein-serine/threonine phosphatase9.1e-6297.54Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DG FDVVFTFEEKVFDMVIE L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL

A0A6J1K8Q5 Protein-serine/threonine phosphatase9.1e-6297.54Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MK+RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DG FDVVFTFEEKVFDMVIE L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL

SwissProt top hitse value%identityAlignment
Q17QI2 RNA polymerase II subunit A C-terminal domain phosphatase SSU721.3e-3360.5Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIEGL
        FD++ T EE+V+D V+E L
Subjt:  FDVVFTFEEKVFDMVIEGL

Q5ZJQ7 RNA polymerase II subunit A C-terminal domain phosphatase SSU721.3e-3360.5Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIEGL
        FD++ T EE+V+D V+E L
Subjt:  FDVVFTFEEKVFDMVIEGL

Q6PC19 RNA polymerase II subunit A C-terminal domain phosphatase SSU727.8e-3458.82Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIEGL
        FD+V T EE+V+D V+E L
Subjt:  FDVVFTFEEKVFDMVIEGL

Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU721.0e-3360.5Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIEGL
        FD++ T EE+V+D V+E L
Subjt:  FDVVFTFEEKVFDMVIEGL

Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU721.3e-3360.5Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIEGL
        FD++ T EE+V+D V+E L
Subjt:  FDVVFTFEEKVFDMVIEGL

Arabidopsis top hitse value%identityAlignment
AT1G73820.1 Ssu72-like family protein6.3e-5581.15Show/hide
Query:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        M+ RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA 
Subjt:  MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEGL
        DG FDVV TFEEKVFD V+E L
Subjt:  DGSFDVVFTFEEKVFDMVIEGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCATCGTTATGCAATGGTTTGCTCATCGAACCAGAACCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCGTATGGCACTGGGGC
TCACGTGAAGCTTCCTGGACCTTCTCTTCGAGAACCCAATGTGTACGATTTTGGTACCCCCTACAAGCACATGTTTGATGATCTCCGTCGAAAAGATCCTGAACTATACA
AGCGTAACGGCATTTTGCCCATGCTCAAAAGAAATGCAGCAGTCAAAACCGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGACGTGGTATTTACTTTT
GAAGAAAAGGTCTTCGATATGGTTATTGAAGGACTTGGTTATTATTGCTGGCTGTTGGACCTTGAAGCTGTGGGGAATTTGAAGGACTCCGAGGTTGCAGAATGGGCTGA
TCTTAGCTTGATTCTCGACCCCATTCGCTTATCCCAAACAGTAGACTCCTGGATATGGCCCTCAATCCAAATGGCAGCTTCTCCACCAAATCCCTCACCACTGACATGTC
TGGAACCTCTAGCCTTATTGAACAATCTTTGGCTAAGAATTATGACTCCTTTTGGCTGGTCCTTTATTCTCCCGGGTCGAGTGGAGGATCTCCTTGCATCATCTTTGATG
GGCCACCCTTTTAAGAATACTAAAGCTCTGTTATGGATGAACATCATCAGAGCCTTCTATTGGAGCTTATGGAGAGAAAGAAATAAAAGAACTTTTCAAGGAACGGAGTC
CTCTTTTGAAGATCTAGGAGTGACCATCATAGATTCTAAGTTTGATCTAAGAGTGATTCATCTTCTAACTAAACTCTTGGTTGGAATCATTCGGCCCATTATGATGGCAT
TCGTGCAAATAATTCAAATATTTGCTCATTTTGAGGTTGTGTCCGAGTATGCACTGTTCTTTTCCATGGTATCTTTAACTGATGATGGGACGCTTAAAGAGATGCTGAAA
TTGTTGATGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCATCGTTATGCAATGGTTTGCTCATCGAACCAGAACCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCGTATGGCACTGGGGC
TCACGTGAAGCTTCCTGGACCTTCTCTTCGAGAACCCAATGTGTACGATTTTGGTACCCCCTACAAGCACATGTTTGATGATCTCCGTCGAAAAGATCCTGAACTATACA
AGCGTAACGGCATTTTGCCCATGCTCAAAAGAAATGCAGCAGTCAAAACCGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGACGTGGTATTTACTTTT
GAAGAAAAGGTCTTCGATATGGTTATTGAAGGACTTGGTTATTATTGCTGGCTGTTGGACCTTGAAGCTGTGGGGAATTTGAAGGACTCCGAGGTTGCAGAATGGGCTGA
TCTTAGCTTGATTCTCGACCCCATTCGCTTATCCCAAACAGTAGACTCCTGGATATGGCCCTCAATCCAAATGGCAGCTTCTCCACCAAATCCCTCACCACTGACATGTC
TGGAACCTCTAGCCTTATTGAACAATCTTTGGCTAAGAATTATGACTCCTTTTGGCTGGTCCTTTATTCTCCCGGGTCGAGTGGAGGATCTCCTTGCATCATCTTTGATG
GGCCACCCTTTTAAGAATACTAAAGCTCTGTTATGGATGAACATCATCAGAGCCTTCTATTGGAGCTTATGGAGAGAAAGAAATAAAAGAACTTTTCAAGGAACGGAGTC
CTCTTTTGAAGATCTAGGAGTGACCATCATAGATTCTAAGTTTGATCTAAGAGTGATTCATCTTCTAACTAAACTCTTGGTTGGAATCATTCGGCCCATTATGATGGCAT
TCGTGCAAATAATTCAAATATTTGCTCATTTTGAGGTTGTGTCCGAGTATGCACTGTTCTTTTCCATGGTATCTTTAACTGATGATGGGACGCTTAAAGAGATGCTGAAA
TTGTTGATGATGTAG
Protein sequenceShow/hide protein sequence
MKHRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTF
EEKVFDMVIEGLGYYCWLLDLEAVGNLKDSEVAEWADLSLILDPIRLSQTVDSWIWPSIQMAASPPNPSPLTCLEPLALLNNLWLRIMTPFGWSFILPGRVEDLLASSLM
GHPFKNTKALLWMNIIRAFYWSLWRERNKRTFQGTESSFEDLGVTIIDSKFDLRVIHLLTKLLVGIIRPIMMAFVQIIQIFAHFEVVSEYALFFSMVSLTDDGTLKEMLK
LLMM