; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000875 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000875
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:18646897..18647385
RNA-Seq ExpressionLag0000875
SyntenyLag0000875
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381086.1 uncharacterized protein LOC107174583 [Citrus sinensis]2.1e-4253.95Show/hide
Query:  RTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESITTW
        RTL+ELA P  +Q PLCI Y++ + N+ L++ L HLLP FHG AGEDP +HL+E    C  M+P GVTEEQI LRAFPFS+ G AK+W Y LP  SITTW
Subjt:  RTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESITTW

Query:  AEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
         ++++HF+  YF   RA  IR +IC I Q  GE L++Y +RF +L A  P H
Subjt:  AEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

XP_027077142.1 uncharacterized protein LOC113700913 [Coffea arabica]6.2e-4253.25Show/hide
Query:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT
        A RTL+ELATP  +Q PLCI Y +T+  + L++ L+HLLP+F GIAGEDP +HL+E    C  M+P GVTEEQ+ L AFPFSL  +AK+W + LP  SIT
Subjt:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT

Query:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        TW  ++  F+  +F   RA  IR EIC I QA+GE L++Y +RF +L A  PHH
Subjt:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

XP_027122273.1 uncharacterized protein LOC113739241 [Coffea arabica]5.6e-4353.9Show/hide
Query:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT
        A RTL+ELATP  +Q PLCI YL+T+  + L++ L+HLLP+F G+AGEDP +HL+E    C  M+P GVTEEQI LRAFPFSL  +AK+W + LP  SIT
Subjt:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT

Query:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        TW  ++  F+  +F   RA  IR EIC + QA+GE L++Y +RF +L A  PHH
Subjt:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

XP_027169579.1 uncharacterized protein LOC113769319 [Coffea eugenioides]5.6e-4353.9Show/hide
Query:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT
        A RTL+ELATP  +Q PLCI YL+T+  + L++ L+HLLP+F G+AGEDP +HL+E    C  M+P GVTEEQI LRAFPFSL  +AK+W + LP  SIT
Subjt:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT

Query:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        TW  ++  F+  +F   RA  IR EIC + QA+GE L++Y +RF +L A  PHH
Subjt:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

XP_038978941.1 uncharacterized protein LOC120109260, partial [Phoenix dactylifera]5.6e-4356.21Show/hide
Query:  RTLKELATPYFSQTPLCIVYLETQG-NYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESITT
        RTLKELA PY +Q PLCI +       + L++ L+HLLP+FHG+AGEDP +HL+E    C  MKP+GVTEEQI LRAFPFSL   AK+W Y LP  SIT 
Subjt:  RTLKELATPYFSQTPLCIVYLETQG-NYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESITT

Query:  WAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        W EM+  F+  YF   RA  IR EIC + Q +GE+L +Y +RF KLYA  PHH
Subjt:  WAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

TrEMBL top hitse value%identityAlignment
A0A6P6SE77 uncharacterized protein LOC1136906456.6e-4253.25Show/hide
Query:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT
        A RTL+ELATP  +Q PLCI +  T+  + L++ L+HLLP+F GIAGEDP +HL+E    C  MKP GVTE+ I LRAFPFSL  +AK+W + LP  SIT
Subjt:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT

Query:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        TW E++  F+  +F   RA  IR EIC + QA+GE L++Y +RF +L A  PHH
Subjt:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

A0A6P6SET8 uncharacterized protein LOC1136905525.1e-4253.95Show/hide
Query:  RTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESITTW
        RTL+ELA P  +Q PLCI Y   +  + L++ L+HLLPSFHG+ GEDP +HL+E    C  MKP GVTEEQI LRAFPFSL  +AK+W Y LP  SI+TW
Subjt:  RTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESITTW

Query:  AEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
         +M++HF+  +F   RA  IR +IC I Q +GE L +Y +RF +L A  PHH
Subjt:  AEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

A0A6P6TGH5 uncharacterized protein LOC1137009133.0e-4253.25Show/hide
Query:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT
        A RTL+ELATP  +Q PLCI Y +T+  + L++ L+HLLP+F GIAGEDP +HL+E    C  M+P GVTEEQ+ L AFPFSL  +AK+W + LP  SIT
Subjt:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT

Query:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        TW  ++  F+  +F   RA  IR EIC I QA+GE L++Y +RF +L A  PHH
Subjt:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

A0A6P6U7T0 uncharacterized protein LOC1137083985.1e-4253.25Show/hide
Query:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT
        A RTL+ELATP  +Q PLCI +  T+  + L++ L+HLLP+F GIAGEDP +HL+E    C  MKP GVTE+ I LRAFPFSL  +AK+W + LP  SIT
Subjt:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT

Query:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        TW E++  F+  +F   RA  IR EIC + QA+GE L++Y +RF +L A  PHH
Subjt:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

A0A6P6X3G8 uncharacterized protein LOC1137392412.7e-4353.9Show/hide
Query:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT
        A RTL+ELATP  +Q PLCI YL+T+  + L++ L+HLLP+F G+AGEDP +HL+E    C  M+P GVTEEQI LRAFPFSL  +AK+W + LP  SIT
Subjt:  AARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESIT

Query:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH
        TW  ++  F+  +F   RA  IR EIC + QA+GE L++Y +RF +L A  PHH
Subjt:  TWAEMQEHFITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCACGCACTCTAAAAGAGTTGGCTACACCTTATTTTAGCCAAACCCCCTTGTGCATAGTGTATCTCGAGACCCAAGGTAATTACGCACTTAGAGCTAGTTTAAT
GCACTTACTACCTTCCTTTCATGGCATTGCAGGAGAGGACCCCTTTAGGCATCTGCAAGAGCTAAGGACGACTTGCTTAGGGATGAAGCCAAGTGGCGTGACTGAAGAGC
AAATTTGTTTAAGGGCTTTCCCGTTTTCCTTGGGAGGAGAGGCAAAGGAGTGGTTTTATTTGTTGCCTTTGGAGTCAATAACCACATGGGCTGAGATGCAAGAGCACTTC
ATTACAAGTTACTTCTCAGTTTTGCGAGCAAGAAAGATTAGAATGGAGATTTGTAGTATCACTCAAGCGTCTGGGGAGGCGTTATTCGACTATCAAGATCGTTTCAACAA
GCTTTATGCATGCTTTCCCCATCATATAAGTTTATCGAGCACCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCACGCACTCTAAAAGAGTTGGCTACACCTTATTTTAGCCAAACCCCCTTGTGCATAGTGTATCTCGAGACCCAAGGTAATTACGCACTTAGAGCTAGTTTAAT
GCACTTACTACCTTCCTTTCATGGCATTGCAGGAGAGGACCCCTTTAGGCATCTGCAAGAGCTAAGGACGACTTGCTTAGGGATGAAGCCAAGTGGCGTGACTGAAGAGC
AAATTTGTTTAAGGGCTTTCCCGTTTTCCTTGGGAGGAGAGGCAAAGGAGTGGTTTTATTTGTTGCCTTTGGAGTCAATAACCACATGGGCTGAGATGCAAGAGCACTTC
ATTACAAGTTACTTCTCAGTTTTGCGAGCAAGAAAGATTAGAATGGAGATTTGTAGTATCACTCAAGCGTCTGGGGAGGCGTTATTCGACTATCAAGATCGTTTCAACAA
GCTTTATGCATGCTTTCCCCATCATATAAGTTTATCGAGCACCTTTTGA
Protein sequenceShow/hide protein sequence
MAARTLKELATPYFSQTPLCIVYLETQGNYALRASLMHLLPSFHGIAGEDPFRHLQELRTTCLGMKPSGVTEEQICLRAFPFSLGGEAKEWFYLLPLESITTWAEMQEHF
ITSYFSVLRARKIRMEICSITQASGEALFDYQDRFNKLYACFPHHISLSSTF