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Lag0000876 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000876
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:18650037..18650644
RNA-Seq ExpressionLag0000876
SyntenyLag0000876
Gene Ontology termsNA
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015386487.1 uncharacterized protein LOC107177338 [Citrus sinensis]5.5e-1842.86Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-----KFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIERR
        MP Y KFMKE L+ K+K ++ E V L   C+A LQ K+P KL D  SF+IPC  G     K L  +DF V+D+ EN  L +I GR FLATGRA+ID++ R
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-----KFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIERR

Query:  ELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID
        +LI+ VQ+++ I   +   +  +E      + C ++ T+D
Subjt:  ELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID

XP_016442735.1 PREDICTED: uncharacterized protein LOC107768147, partial [Nicotiana tabacum]3.9e-1641.18Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------KFLLAVDFFVMDIKENSALSVILGRLFLATGR
        +P+Y KF+KE L+ K+K ++  +V L   CS  LQ K+P K  D  SF+IPC+ G             KF   +DF VM+++EN  + +ILGR FLATGR
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------KFLLAVDFFVMDIKENSALSVILGRLFLATGR

Query:  AIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVV
        AI+DI+ R+L++ V  E+ + K  E   +  E  VV
Subjt:  AIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVV

XP_020424519.1 uncharacterized protein LOC109950362 [Prunus persica]3.9e-1646.22Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-----KFL--LAVDFFVMDIKENSALSVILGRLFLATGRAIIDIE
        MPSY KFMK+ ++KK+K  + EIV L+  CSA LQ+K+P KL D  SF+IPC  G     K L  L  +F ++D++E++   +ILGRLFL TGR +ID++
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-----KFL--LAVDFFVMDIKENSALSVILGRLFLATGRAIIDIE

Query:  RRELIIWVQHEKEILKAFE
        +  LI+ V  E+     FE
Subjt:  RRELIIWVQHEKEILKAFE

XP_024027475.1 uncharacterized protein LOC112093396, partial [Morus notabilis]1.3e-1637.5Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------------------KFLLAVDFFVMDIKENSALS
        MPSY  FMKE L KK++    EIV L   CSA LQ+K+P+K  D  SF+IPC                            KF+  VDF V+D+ E+  + 
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------------------KFLLAVDFFVMDIKENSALS

Query:  VILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID
        +I+ R FLATGR +ID+++REL++  + EK +   F+     SET       C R  TI+
Subjt:  VILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID

XP_024028257.1 uncharacterized protein LOC112093645 [Morus notabilis]1.3e-1637.5Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------------------KFLLAVDFFVMDIKENSALS
        MPSY  FMKE L KK++    EIV L   CSA LQ+K+P+K  D  SF+IPC                            KF+  VDF V+D+ E+  + 
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------------------KFLLAVDFFVMDIKENSALS

Query:  VILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID
        +I+ R FLATGR +ID+++REL++  + EK +   F+     SET       C R  TI+
Subjt:  VILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID

TrEMBL top hitse value%identityAlignment
A0A1S3XS84 uncharacterized protein LOC1077681471.9e-1641.18Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------KFLLAVDFFVMDIKENSALSVILGRLFLATGR
        +P+Y KF+KE L+ K+K ++  +V L   CS  LQ K+P K  D  SF+IPC+ G             KF   +DF VM+++EN  + +ILGR FLATGR
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG-------------KFLLAVDFFVMDIKENSALSVILGRLFLATGR

Query:  AIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVV
        AI+DI+ R+L++ V  E+ + K  E   +  E  VV
Subjt:  AIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVV

A0A2G9I3H5 Reverse transcriptase3.0e-1434.52Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG---------------------------------------------
        MPSY KFMK+ L+KK++    E V L   CS  +Q K+P KL D  SF IPC  G                                             
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG---------------------------------------------

Query:  -KFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIERRELIIWVQHEK---EILKAFEDPQSTSE
         KF+   DF V+DI+ +S + +ILGRLFLATGR +ID+++ EL + VQ ++    I KA + P  + E
Subjt:  -KFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIERRELIIWVQHEK---EILKAFEDPQSTSE

A0A6P4CCW8 uncharacterized protein LOC1074739682.1e-1542.86Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSF-------SIPCNFGKFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIE
        MP Y  FMKE L+ K+  K++E V L    SA +Q K+PEK+ DL SF        +    G F+  VDF ++D++E+   S+ILGR FL TGRA+ID++
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSF-------SIPCNFGKFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIE

Query:  RRELIIWVQHEKEILKAFE
        + EL + V  E+ +L  FE
Subjt:  RRELIIWVQHEKEILKAFE

A0A6P4DC75 uncharacterized protein LOC1074895456.1e-1535.37Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG--------------------------KFLLAVDFFVMDIKENSAL
        MP Y KF KE + +K+   + + V L   CSA +Q+K+P+K+ DL SF IPCN G                          +F+   DF V+D++E +  
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFG--------------------------KFLLAVDFFVMDIKENSAL

Query:  SVILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETI
        S+ILGR FLAT  AIID+++ EL++ +  EK +   F+      E I
Subjt:  SVILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETI

G0Y6U4 Retrotransposon gag protein6.8e-1432.31Show/hide
Query:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNF----------------------------------------------
        MP Y KFMKE L+KKK+ K  E V L   CSA +Q  +P K+ D  SF IPC                                                
Subjt:  MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNF----------------------------------------------

Query:  --------------GKFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID
                      GKF L  DF ++D  E+   S+ILGR FLATGRA+ID+E  EL++ V +E+ +   F+D  ST E       +C +   ID
Subjt:  --------------GKFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIERRELIIWVQHEKEILKAFEDPQSTSETIVVGYRKCARKSTID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAGCTATAAAAAGTTCATGAAGGAATGGCTCAACAAGAAAAAGAAGGAAAAGAAGTTGGAGATCGTGTGCCTTGCATCAACTTGCAGTGCTCGCCTTCAGCAGAA
AGTACCTGAGAAATTGGCTGACCTATGGAGTTTTTCTATTCCTTGTAATTTTGGTAAATTTCTCCTTGCTGTTGATTTCTTTGTGATGGATATCAAAGAGAATTCTGCTC
TGTCTGTTATATTAGGGAGGTTGTTCCTTGCTACAGGGCGAGCTATAATTGACATTGAGCGCAGGGAGCTTATCATTTGGGTCCAACATGAGAAAGAGATTTTGAAGGCA
TTTGAGGACCCTCAGAGCACATCTGAGACAATAGTTGTGGGCTATAGGAAATGTGCTAGGAAGAGCACCATTGATGGAACATCTGACATTACACCACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAGCTATAAAAAGTTCATGAAGGAATGGCTCAACAAGAAAAAGAAGGAAAAGAAGTTGGAGATCGTGTGCCTTGCATCAACTTGCAGTGCTCGCCTTCAGCAGAA
AGTACCTGAGAAATTGGCTGACCTATGGAGTTTTTCTATTCCTTGTAATTTTGGTAAATTTCTCCTTGCTGTTGATTTCTTTGTGATGGATATCAAAGAGAATTCTGCTC
TGTCTGTTATATTAGGGAGGTTGTTCCTTGCTACAGGGCGAGCTATAATTGACATTGAGCGCAGGGAGCTTATCATTTGGGTCCAACATGAGAAAGAGATTTTGAAGGCA
TTTGAGGACCCTCAGAGCACATCTGAGACAATAGTTGTGGGCTATAGGAAATGTGCTAGGAAGAGCACCATTGATGGAACATCTGACATTACACCACCATGA
Protein sequenceShow/hide protein sequence
MPSYKKFMKEWLNKKKKEKKLEIVCLASTCSARLQQKVPEKLADLWSFSIPCNFGKFLLAVDFFVMDIKENSALSVILGRLFLATGRAIIDIERRELIIWVQHEKEILKA
FEDPQSTSETIVVGYRKCARKSTIDGTSDITPP