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Lag0000879 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000879
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:18732947..18738334
RNA-Seq ExpressionLag0000879
SyntenyLag0000879
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021740145.1 uncharacterized protein LOC110706537 [Chenopodium quinoa]9.6e-0930.53Show/hide
Query:  TRTTTISSNNSNLKAKLLPIQLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKEKKSEVSSEPLVIFYYSEPTPFPS---------RY
        ++ + ISS  S L+AK    +LPS+ E+  K+  +AITLRSG  LK   + + +   L   +  KE + E  + P     Y    PFP          R+
Subjt:  TRTTTISSNNSNLKAKLLPIQLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKEKKSEVSSEPLVIFYYSEPTPFPS---------RY

Query:  ATFLKKWCTKKIT-----SNKNETSENLSMFVFKPLPEKCLDP---------------------------VSWVCLTCMTL-----ASIIIHLADKSSIS
        A FLK+ CT K         K + S ++S    K LPEKC DP                           + +     + L       ++I LAD+S++ 
Subjt:  ATFLKKWCTKKIT-----SNKNETSENLSMFVFKPLPEKCLDP---------------------------VSWVCLTCMTL-----ASIIIHLADKSSIS

Query:  LLGVWENVRAKVEDFFFLADFYVLHM
          GV E+V  KV++  F ADFYVL M
Subjt:  LLGVWENVRAKVEDFFFLADFYVLHM

XP_021763808.1 uncharacterized protein LOC110728473 [Chenopodium quinoa]6.6e-1032.74Show/hide
Query:  QLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKE-----------KKSEVSSEPLVIFYYSEPTPFPS--------------------
        +LPS+PE   KE   AI+LRSG   K L +P+ +T  L E +  +E           K S+V S     F  S   PFPS                    
Subjt:  QLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKE-----------KKSEVSSEPLVIFYYSEPTPFPS--------------------

Query:  ------------------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLLGVWENVRAKVED
                          RYA FLK+ CT K   + +E    SEN+S F+ + +P KC DP     L  +    +II LAD+S+   +GV E+V  +V +
Subjt:  ------------------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLLGVWENVRAKVED

Query:  FFFLADFYVLHMPTPFQPYANSL
          F ADFYVL MP    P A  +
Subjt:  FFFLADFYVLHMPTPFQPYANSL

XP_021764024.1 uncharacterized protein LOC110728690 [Chenopodium quinoa]5.6e-0932.11Show/hide
Query:  QLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKEK-KSEVSSEP--------LVIFYYSEPTPFPS----------------------
        +LPS+PE   KE   AI+LRSG   K L VP+ +T  L E + ++E    E   +P        L++  +S   PFPS                      
Subjt:  QLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKEK-KSEVSSEP--------LVIFYYSEPTPFPS----------------------

Query:  ----------------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLLGVWENVRAKVEDFF
                        RYA FLK+ CT K   + +E    SEN+S+ + + +P KC D      L  +    +II LAD+S+   +GV E+V  +V +  
Subjt:  ----------------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLLGVWENVRAKVEDFF

Query:  FLADFYVLHMPTPFQPYA
        F ADFYVL MP    P A
Subjt:  FLADFYVLHMPTPFQPYA

XP_023748222.1 uncharacterized protein LOC111896464 [Lactuca sativa]2.1e-0835.66Show/hide
Query:  FETKISKEKKSEVSSEPLVIFYYSE-------PTPFPSRYATFLKKWCTKKITSNKNET---SENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLA
        F +++S  KK    SE + +F+  E             RYA FLK+ CT K     NET   SEN+S  + K +P KC DP +      +T   +II L 
Subjt:  FETKISKEKKSEVSSEPLVIFYYSE-------PTPFPSRYATFLKKWCTKKITSNKNET---SENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLA

Query:  DKSSISLLGVWENVRAKVEDFFFLADFYVLHMPTPFQPYANSL
        D+S +   GV E+V  +V +  F ADFYVL M     P ++S+
Subjt:  DKSSISLLGVWENVRAKVEDFFFLADFYVLHMPTPFQPYANSL

XP_031091054.1 uncharacterized protein LOC115996048 [Ipomoea triloba]1.9e-0932.2Show/hide
Query:  QLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKE-------KKSEVSSEPLVIFYYSEPTPFPSR-----------------------
        +LP + E+  KE + AITLRSG   K L + SS  +   + + SKE       + S+VSSE  V  Y S   PFPSR                       
Subjt:  QLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKE-------KKSEVSSEPLVIFYYSEPTPFPSR-----------------------

Query:  ------------YATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLLGVWENVRAKVEDFFFLADF
                    YA FLK+ CT K      E     +N+S  +   LP KC DP +          S+++ LAD+S +  +GV E+V  +V    F  DF
Subjt:  ------------YATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLLGVWENVRAKVEDFFFLADF

Query:  YVLHM
        YVL M
Subjt:  YVLHM

TrEMBL top hitse value%identityAlignment
A0A6P4B4Z6 uncharacterized protein LOC1074602043.0e-0830.22Show/hide
Query:  SSNNSNLKAKLLPIQLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIR---------LFETKISKEKKSEVS-SEP--LVIFYYSEPTPFP------
        SSNN+N  +      LPS+P    K GL+ ITLRS   L+ +P    + I            E ++  ++  EVS  EP    I   S P PF       
Subjt:  SSNNSNLKAKLLPIQLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIR---------LFETKISKEKKSEVS-SEP--LVIFYYSEPTPFP------

Query:  ------------------------------SRYATFLKKWCTKKITSNKNETSENLSMF--VFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLL
                                      S+YA FLK   T K    + ET    S    + KP+PEKC DP    CL C  +     H  DK+ I+++
Subjt:  ------------------------------SRYATFLKKWCTKKITSNKNETSENLSMF--VFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLL

Query:  GVWENVRAKVEDFFFLADFYVLHMP
        G+ E+V   ++D  F  DFY+L MP
Subjt:  GVWENVRAKVEDFFFLADFYVLHMP

A0A6P8D4X0 Reverse transcriptase5.1e-0828.63Show/hide
Query:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------
        +LPS+ EI  +E   A+TLRSG VL+P +P  +    ++ E +  KEK  + + E ++   I     P PFPS                           
Subjt:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------

Query:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH
                RYA FLK+ CT K   +K E     EN S  + + LP+KC DP  +                     +  M L+              III 
Subjt:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH

Query:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHM
        LAD+S+    G+ E+V  KV +F F  DFY++ M
Subjt:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHM

A0A6P8DCT8 Reverse transcriptase5.1e-0825.91Show/hide
Query:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------
        +LPS+ EI  +E   A+TLRSG VL+P +P  +    ++ E +  KEK  + + E ++   I     P PFPS                           
Subjt:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------

Query:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH
                RYA FLK+ CT K   +K E     EN S  + + LP+KC DP  +                     +  M L+              III 
Subjt:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH

Query:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHMPTPFQPYANSLHRIPPLACPLQECVGSMQLYRIQSGLYHIVSLGYEVVSAITNFQWHETEDEPPYY
        LAD+S+    G+ E+V  KV +F F  DFY++ M       +NS H +  L  P       M+  R +  + H  +L  E       F   +    P   
Subjt:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHMPTPFQPYANSLHRIPPLACPLQECVGSMQLYRIQSGLYHIVSLGYEVVSAITNFQWHETEDEPPYY

Query:  YYEPPSSGNSLEDLIIEVTNSSFEFQQEEHQCQEITELERAFFADGDAKFDL-PLKDHI
          E  S  + ++  + +V    F  ++ +   Q+I + +  +  DG AK  + PLK  I
Subjt:  YYEPPSSGNSLEDLIIEVTNSSFEFQQEEHQCQEITELERAFFADGDAKFDL-PLKDHI

A0A6P8DJV3 Reverse transcriptase5.1e-0828.63Show/hide
Query:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------
        +LPS+ EI  +E   A+TLRSG VL+P +P  +    ++ E +  KEK  + + E ++   I     P PFPS                           
Subjt:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------

Query:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH
                RYA FLK+ CT K   +K E     EN S  + + LP+KC DP  +                     +  M L+              III 
Subjt:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH

Query:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHM
        LAD+S+    G+ E+V  KV +F F  DFY++ M
Subjt:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHM

A0A6P8E7C5 Reverse transcriptase5.1e-0828.63Show/hide
Query:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------
        +LPS+ EI  +E   A+TLRSG VL+P +P  +    ++ E +  KEK  + + E ++   I     P PFPS                           
Subjt:  QLPSEPEIPKKEGLHAITLRSGAVLKP-LPVPSSQTIRLFETKISKEKKSEVSSEPLV---IFYYSEPTPFPS---------------------------

Query:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH
                RYA FLK+ CT K   +K E     EN S  + + LP+KC DP  +                     +  M L+              III 
Subjt:  --------RYATFLKKWCTKKITSNKNE---TSENLSMFVFKPLPEKCLDPVSW-------------------VCLTCMTLA-------------SIIIH

Query:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHM
        LAD+S+    G+ E+V  KV +F F  DFY++ M
Subjt:  LADKSSISLLGVWENVRAKVEDFFFLADFYVLHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAGGAGGGTATGCAAACCCCAGCGCTCAAGGTAGGAGGTATGATTCATATTCTAACATTGACAATCTTGGATGGAGGGATCATCCCAACTTTAGCTACAACCAG
AACAACCACCATCAGCAGCAACAATTCAAATTTGAAGGCCAAGCTTCTTCCCATTCAGTTGCCTAGTGAACCTGAAATTCCCAAGAAGGAAGGTCTACATGCCATCACAC
TCAGGAGTGGAGCTGTCTTGAAGCCCCTCCCAGTTCCTTCATCCCAGACCATCAGACTATTTGAGACTAAAATTTCTAAAGAAAAGAAAAGTGAGGTAAGTTCTGAACCT
CTTGTTATTTTTTACTATTCTGAGCCTACTCCCTTTCCTTCCAGGTATGCCACATTCCTCAAAAAGTGGTGCACAAAGAAGATAACTTCTAATAAGAATGAGACAAGTGA
AAATCTTTCCATGTTTGTCTTTAAACCTCTACCAGAGAAATGTTTAGATCCAGTGAGTTGGGTCTGCTTGACTTGCATGACACTAGCTAGCATTATTATTCATTTGGCAG
ATAAGTCTAGCATTTCCCTATTAGGTGTTTGGGAGAATGTCCGCGCTAAAGTAGAGGATTTTTTCTTTCTTGCTGACTTTTATGTTCTTCATATGCCTACACCATTCCAG
CCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCCTCTACAGGAATGTGTTGGATCAATGCAATTGTATCGAATACAAAGTGGGTTGTATCACATAGTGTC
ACTAGGATATGAGGTGGTTAGCGCAATTACTAATTTTCAGTGGCATGAGACAGAGGATGAGCCACCATATTATTATTACGAGCCTCCTAGTTCAGGTAATTCTCTTGAAG
ATTTAATTATTGAGGTTACTAATAGTTCTTTTGAGTTTCAGCAGGAGGAGCATCAGTGCCAAGAGATCACCGAGCTAGAGAGAGCATTCTTTGCAGACGGCGATGCTAAG
TTTGATTTGCCATTGAAAGATCATATCTTGAGATTGAGGAAGATTATGAGCCAGAATGTGAGGAGTTCAAGGTATTTGGGGTTAGAGCTTCCCGGGAGCACTTTGGAGCA
AAAAGGACTTAAGTGGAGCAAATTAGGCCAAATCCCGAGCATTGGAAGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAGGAGGGTATGCAAACCCCAGCGCTCAAGGTAGGAGGTATGATTCATATTCTAACATTGACAATCTTGGATGGAGGGATCATCCCAACTTTAGCTACAACCAG
AACAACCACCATCAGCAGCAACAATTCAAATTTGAAGGCCAAGCTTCTTCCCATTCAGTTGCCTAGTGAACCTGAAATTCCCAAGAAGGAAGGTCTACATGCCATCACAC
TCAGGAGTGGAGCTGTCTTGAAGCCCCTCCCAGTTCCTTCATCCCAGACCATCAGACTATTTGAGACTAAAATTTCTAAAGAAAAGAAAAGTGAGGTAAGTTCTGAACCT
CTTGTTATTTTTTACTATTCTGAGCCTACTCCCTTTCCTTCCAGGTATGCCACATTCCTCAAAAAGTGGTGCACAAAGAAGATAACTTCTAATAAGAATGAGACAAGTGA
AAATCTTTCCATGTTTGTCTTTAAACCTCTACCAGAGAAATGTTTAGATCCAGTGAGTTGGGTCTGCTTGACTTGCATGACACTAGCTAGCATTATTATTCATTTGGCAG
ATAAGTCTAGCATTTCCCTATTAGGTGTTTGGGAGAATGTCCGCGCTAAAGTAGAGGATTTTTTCTTTCTTGCTGACTTTTATGTTCTTCATATGCCTACACCATTCCAG
CCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCCTCTACAGGAATGTGTTGGATCAATGCAATTGTATCGAATACAAAGTGGGTTGTATCACATAGTGTC
ACTAGGATATGAGGTGGTTAGCGCAATTACTAATTTTCAGTGGCATGAGACAGAGGATGAGCCACCATATTATTATTACGAGCCTCCTAGTTCAGGTAATTCTCTTGAAG
ATTTAATTATTGAGGTTACTAATAGTTCTTTTGAGTTTCAGCAGGAGGAGCATCAGTGCCAAGAGATCACCGAGCTAGAGAGAGCATTCTTTGCAGACGGCGATGCTAAG
TTTGATTTGCCATTGAAAGATCATATCTTGAGATTGAGGAAGATTATGAGCCAGAATGTGAGGAGTTCAAGGTATTTGGGGTTAGAGCTTCCCGGGAGCACTTTGGAGCA
AAAAGGACTTAAGTGGAGCAAATTAGGCCAAATCCCGAGCATTGGAAGCAAGTGA
Protein sequenceShow/hide protein sequence
MQKEGMQTPALKVGGMIHILTLTILDGGIIPTLATTRTTTISSNNSNLKAKLLPIQLPSEPEIPKKEGLHAITLRSGAVLKPLPVPSSQTIRLFETKISKEKKSEVSSEP
LVIFYYSEPTPFPSRYATFLKKWCTKKITSNKNETSENLSMFVFKPLPEKCLDPVSWVCLTCMTLASIIIHLADKSSISLLGVWENVRAKVEDFFFLADFYVLHMPTPFQ
PYANSLHRIPPLACPLQECVGSMQLYRIQSGLYHIVSLGYEVVSAITNFQWHETEDEPPYYYYEPPSSGNSLEDLIIEVTNSSFEFQQEEHQCQEITELERAFFADGDAK
FDLPLKDHILRLRKIMSQNVRSSRYLGLELPGSTLEQKGLKWSKLGQIPSIGSK