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Lag0000896 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000896
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:19169054..19170117
RNA-Seq ExpressionLag0000896
SyntenyLag0000896
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144467.1 uncharacterized protein LOC111014147 [Momordica charantia]1.2e-0643.21Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR
        +R KS++CLFHR H H+T++C  LK+E+E LIRR +LKE V +      +AT++G+S  D   + +I+TI     E+  GR
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR

XP_022158093.1 uncharacterized protein LOC111024662 [Momordica charantia]6.8e-0741.41Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIK-IKTIFRSATEKIQG---RADLALGKADPTLTK
        +R K ++CLFHR+H H+T++C  LK+E+E LIRR +LKE V D      +AT +  S  DD+  +K I+TIF   TE+  G   +A +   +A P   K
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIK-IKTIFRSATEKIQG---RADLALGKADPTLTK

XP_022158669.1 uncharacterized protein LOC111025131 [Momordica charantia]4.4e-0640.74Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR
        +R K Q+CLFHR+H H+T++C  LK+E+E LI+  +LKE + D      +AT++G+S  D   + +I+TI     E+  GR
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.5e-0641.98Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR
        +R K ++CLFHR+H H+T++C  LK+E+E LIRR +LKE V +      +AT++G+S  D   + +I+TI     E+  GR
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR

XP_038687492.1 uncharacterized protein LOC119986871 [Tripterygium wilfordii]2.0e-0648.44Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELS
        +R   ++C+FH++H H T +C QLKDEIE+LIRR +LK+L ++  +KR RA       RDDE S
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELS

TrEMBL top hitse value%identityAlignment
A0A2N9H9N4 RNase H domain-containing protein3.3e-0735.71Show/hide
Query:  MPQKFKIPTFQQYDGKKNHVHHLDTYRSNEAMVWKIAKEMYRLVQRIGLRFCHDEKLLSSIGLERRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRF
        +P KF++P  + +DG ++ + +LD++R    MV+       ++     LR+    KL  + G  RR K  +C FHR+ EH+T +C  LK++IE LIR+  
Subjt:  MPQKFKIPTFQQYDGKKNHVHHLDTYRSNEAMVWKIAKEMYRLVQRIGLRFCHDEKLLSSIGLERRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRF

Query:  LKELVADENQK-RLRATRDGQSRRDD
        LK+ V  +NQK RL    + ++R DD
Subjt:  LKELVADENQK-RLRATRDGQSRRDD

A0A2N9I6H0 Uncharacterized protein4.3e-0730.43Show/hide
Query:  MPQKFKIPTFQQYDGKKNHVHHLDTYR---SNEAMVWKIAKEMYRLVQRIGLRFCHDEKLLSSIGLERRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIR
        +P KF++P  + +DG ++ + +LD+++    +  + W                     KL S+ G  RR K  +C FHR+H+H+T +C  LK++IE LIR
Subjt:  MPQKFKIPTFQQYDGKKNHVHHLDTYR---SNEAMVWKIAKEMYRLVQRIGLRFCHDEKLLSSIGLERRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIR

Query:  RRFLKELVADENQK-RLRATRDGQSRRDDELSIKIKTI
        +  LK+ V  +NQ+  L    + ++R DD     I+ I
Subjt:  RRFLKELVADENQK-RLRATRDGQSRRDDELSIKIKTI

A0A6J1CTS4 uncharacterized protein LOC1110141475.6e-0743.21Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR
        +R KS++CLFHR H H+T++C  LK+E+E LIRR +LKE V +      +AT++G+S  D   + +I+TI     E+  GR
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR

A0A6J1DV51 uncharacterized protein LOC1110246623.3e-0741.41Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIK-IKTIFRSATEKIQG---RADLALGKADPTLTK
        +R K ++CLFHR+H H+T++C  LK+E+E LIRR +LKE V D      +AT +  S  DD+  +K I+TIF   TE+  G   +A +   +A P   K
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIK-IKTIFRSATEKIQG---RADLALGKADPTLTK

A0A6J1DWY0 uncharacterized protein LOC1110252937.4e-0741.98Show/hide
Query:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR
        +R K ++CLFHR+H H+T++C  LK+E+E LIRR +LKE V +      +AT++G+S  D   + +I+TI     E+  GR
Subjt:  RRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVADENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCTGAAATGCCACAGAAGTTCAAGATCCCGACCTTCCAGCAGTATGACGGTAAGAAAAACCATGTGCACCACTTGGATACGTACAGGAGCAATGAGGCAATGGT
TTGGAAAATTGCCAAGGAAATGTATAGACTCGTTCAAAGAATTGGCTTGAGGTTTTGTCATGATGAGAAGCTCTTGAGTTCTATTGGTCTGGAAAGGAGAGATAAAAGCC
AGTTTTGTCTTTTCCACCGGAACCACGAACACTCTACTCGAAATTGCATCCAGCTTAAAGATGAGATTGAAACGCTGATTCGTCGTAGATTCCTTAAAGAGCTTGTTGCA
GACGAGAACCAGAAGAGGCTGAGGGCGACTAGGGATGGCCAAAGCCGAAGAGATGATGAACTCTCTATAAAGATCAAAACTATCTTTAGAAGTGCAACAGAAAAGATTCA
AGGTCGAGCCGACCTTGCCTTGGGCAAGGCCGACCCGACCCTAACCAAGACCGAGGCCGACCCTACCTTGAAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCTGAAATGCCACAGAAGTTCAAGATCCCGACCTTCCAGCAGTATGACGGTAAGAAAAACCATGTGCACCACTTGGATACGTACAGGAGCAATGAGGCAATGGT
TTGGAAAATTGCCAAGGAAATGTATAGACTCGTTCAAAGAATTGGCTTGAGGTTTTGTCATGATGAGAAGCTCTTGAGTTCTATTGGTCTGGAAAGGAGAGATAAAAGCC
AGTTTTGTCTTTTCCACCGGAACCACGAACACTCTACTCGAAATTGCATCCAGCTTAAAGATGAGATTGAAACGCTGATTCGTCGTAGATTCCTTAAAGAGCTTGTTGCA
GACGAGAACCAGAAGAGGCTGAGGGCGACTAGGGATGGCCAAAGCCGAAGAGATGATGAACTCTCTATAAAGATCAAAACTATCTTTAGAAGTGCAACAGAAAAGATTCA
AGGTCGAGCCGACCTTGCCTTGGGCAAGGCCGACCCGACCCTAACCAAGACCGAGGCCGACCCTACCTTGAAATTGTAG
Protein sequenceShow/hide protein sequence
MKAEMPQKFKIPTFQQYDGKKNHVHHLDTYRSNEAMVWKIAKEMYRLVQRIGLRFCHDEKLLSSIGLERRDKSQFCLFHRNHEHSTRNCIQLKDEIETLIRRRFLKELVA
DENQKRLRATRDGQSRRDDELSIKIKTIFRSATEKIQGRADLALGKADPTLTKTEADPTLKL