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Lag0000904 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000904
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA replication complex GINS protein SLD5
Genome locationchr4:19290509..19291900
RNA-Seq ExpressionLag0000904
SyntenyLag0000904
Gene Ontology termsGO:0000727 - double-strand break repair via break-induced replication (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0000811 - GINS complex (cellular component)
InterPro domainsIPR008591 - GINS complex subunit Sld5
IPR021151 - GINS subunit, domain A
IPR036224 - GINS, helical bundle-like domain superfamily
IPR038749 - GINS complex protein Sld5, alpha-helical domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048957.1 DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo var. makuwa]1.6e-4384.75Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILP+EASLV RIK QIQ MED+IEE SRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD
        KSDEL RRLS+EE  FTD
Subjt:  KSDELSRRLSEEERRFTD

TYK17610.1 DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo var. makuwa]2.0e-4384.75Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILP+EASLV RIK QIQ MED IEE SRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD
        KSDEL RRLS+EE  FTD
Subjt:  KSDELSRRLSEEERRFTD

XP_008438015.1 PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo]1.6e-4384.75Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILP+EASLV RIK QIQ MED+IEE SRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD
        KSDEL RRLS+EE  FTD
Subjt:  KSDELSRRLSEEERRFTD

XP_022147485.1 DNA replication complex GINS protein SLD5 [Momordica charantia]4.5e-4383.05Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        MSQTDDFE      DVEPLKRAWRNEKAAPEILPFEASL+ RIK QIQLME+ IEE SRSGIDPLIVSLYQMDLDRTQFLLRSYIR+RLQKIEKYM Y+L
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD
        KSDEL  RLSEEER F +
Subjt:  KSDELSRRLSEEERRFTD

XP_022924491.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata]3.4e-4682.58Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILPFEASLV RIK QIQLMED IEE SRSGIDPLIVSLYQMDLDRTQFLLRSYIR+RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD--SH----HFVETL
        KSDEL RRLSEEE  FTD  SH    HF E++
Subjt:  KSDELSRRLSEEERRFTD--SH----HFVETL

TrEMBL top hitse value%identityAlignment
A0A1S3AVG5 DNA replication complex GINS protein SLD57.5e-4484.75Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILP+EASLV RIK QIQ MED+IEE SRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD
        KSDEL RRLS+EE  FTD
Subjt:  KSDELSRRLSEEERRFTD

A0A5A7U3S1 DNA replication complex GINS protein SLD57.5e-4484.75Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILP+EASLV RIK QIQ MED+IEE SRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD
        KSDEL RRLS+EE  FTD
Subjt:  KSDELSRRLSEEERRFTD

A0A5D3D1W7 DNA replication complex GINS protein SLD59.8e-4484.75Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILP+EASLV RIK QIQ MED IEE SRSGIDPLIVSLYQMDLDR QFLLRSYIR RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD
        KSDEL RRLS+EE  FTD
Subjt:  KSDELSRRLSEEERRFTD

A0A6J1E9C0 DNA replication complex GINS protein SLD51.6e-4682.58Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILPFEASLV RIK QIQLMED IEE SRSGIDPLIVSLYQMDLDRTQFLLRSYIR+RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD--SH----HFVETL
        KSDEL RRLSEEE  FTD  SH    HF E++
Subjt:  KSDELSRRLSEEERRFTD--SH----HFVETL

A0A6J1J098 DNA replication complex GINS protein SLD51.6e-4682.58Show/hide
Query:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL
        +SQTDDFET    TDVEPLKRAWRNEKAAPEILPFEASLV RIK QIQLMED IEE SRSGIDPLIVSLYQMDLDRTQFLLRSYIR+RLQKIEKYM YIL
Subjt:  MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYIL

Query:  KSDELSRRLSEEERRFTD--SH----HFVETL
        KSDEL RRLSEEE  FTD  SH    HF E++
Subjt:  KSDELSRRLSEEERRFTD--SH----HFVETL

SwissProt top hitse value%identityAlignment
A2VE40 DNA replication complex GINS protein SLD54.0e-1037.74Show/hide
Query:  VEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDELSRR-----LS
        ++ L++AW NEK APE+L  ++ +VE +  Q++ ME+ ++   R+    L VS++QM+++R +F+L SY+R RL KIEK+  + L+ ++  R      LS
Subjt:  VEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDELSRR-----LS

Query:  EEERRF
         EE  F
Subjt:  EEERRF

Q03406 DNA replication complex GINS protein SLD51.5e-0930.53Show/hide
Query:  DVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGID---------------PLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYI
        D   L ++W+NE+ +PE+LP+   L++R+  +I +    IE  S   +D                L +   + +L+R +F++RSYIR RL KI+K+  Y+
Subjt:  DVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGID---------------PLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYI

Query:  --LKSDE-----LSRRLSEEERRFTDSHHFV
          L  DE     L+  LS++E ++ D+H  +
Subjt:  --LKSDE-----LSRRLSEEERRFTDSHHFV

Q2HE71 DNA replication complex GINS protein SLD51.1e-1036.13Show/hide
Query:  FETLPQ-MTDVEPLKRAWRNEKAAPEILPFEA-SLVERIKGQIQLMEDAIEEDSRSGIDP---LIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILK
        F ++PQ   D++ L RAW  E++APE+L + A  L ERI   I+   + +EE     +DP     + + Q +L+R ++L+RSY+R R+ KI+++  + L 
Subjt:  FETLPQ-MTDVEPLKRAWRNEKAAPEILPFEA-SLVERIKGQIQLMEDAIEEDSRSGIDP---LIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILK

Query:  SDELSRRLSEEERRFTDSH
        +D+L  RLSE E  +   H
Subjt:  SDELSRRLSEEERRFTDSH

Q99LZ3 DNA replication complex GINS protein SLD52.4e-1034.44Show/hide
Query:  VEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDELSRR-----LS
        +E L++AW NEK APE+L  +A +VE +  Q++ ME+ +    R+    L VS+++M+++R +++L SY+R RL KIEK+  +IL+ +++        LS
Subjt:  VEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDELSRR-----LS

Query:  EEERRFTDSH--HFVETLAAVAAGTLATTLDWCILLPAPVAPCFSLDPYTF
         EE  F   +  H       VA   +   L    LL A   P   LD Y F
Subjt:  EEERRFTDSH--HFVETLAAVAAGTLATTLDWCILLPAPVAPCFSLDPYTF

Q9BRT9 DNA replication complex GINS protein SLD51.8e-1038.2Show/hide
Query:  VEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDE
        +E L++AW NEK APE+L  +  +VE +  Q++ ME+ +    R   + L VS++QM+++R +++L SY+R RL KIEK+  ++L+ ++
Subjt:  VEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDE

Arabidopsis top hitse value%identityAlignment
AT5G49010.1 DNA replication protein-related7.5e-3662.2Show/hide
Query:  DFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDEL
        D+ETL   +DVE LKRAWRNEKAAPEIL +E +LV+R K QI+L+E+ IE+   +GIDPL+VSLYQMDLDR QFLLRSY+RVRL KIEK+MF+ L S+E 
Subjt:  DFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDEL

Query:  SRRLSEEERRFTD------SHHFVETL
         RRLSE+E+ F        + HF ET+
Subjt:  SRRLSEEERRFTD------SHHFVETL

AT5G49010.2 DNA replication protein-related7.5e-3662.2Show/hide
Query:  DFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDEL
        D+ETL   +DVE LKRAWRNEKAAPEIL +E +LV+R K QI+L+E+ IE+   +GIDPL+VSLYQMDLDR QFLLRSY+RVRL KIEK+MF+ L S+E 
Subjt:  DFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDEL

Query:  SRRLSEEERRFTD------SHHFVETL
         RRLSE+E+ F        + HF ET+
Subjt:  SRRLSEEERRFTD------SHHFVETL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCAAACAGATGATTTCGAGACGTTGCCTCAAATGACTGATGTCGAGCCTCTAAAGAGGGCCTGGCGTAATGAAAAGGCTGCTCCTGAAATTCTACCCTTTGAGGC
ATCTCTAGTTGAGAGAATCAAAGGACAGATTCAATTAATGGAAGATGCTATAGAGGAAGATTCAAGAAGTGGTATTGATCCGCTAATTGTATCACTCTATCAAATGGATT
TAGATAGGACACAGTTCTTATTGAGATCATATATTAGGGTTCGCTTGCAGAAGATCGAGAAGTACATGTTCTATATCTTGAAGTCAGATGAACTTTCCAGGCGTCTTTCT
GAAGAAGAGAGAAGATTTACTGATAGCCACCATTTTGTTGAAACCCTAGCCGCCGTCGCCGCCGGAACCCTAGCCACCACTCTTGATTGGTGCATCCTACTTCCAGCGCC
AGTGGCTCCATGTTTCTCACTTGACCCATACACTTTCTTCATCATAGTCGGAGATCTTCGTGTTCATCTTCGACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCAAACAGATGATTTCGAGACGTTGCCTCAAATGACTGATGTCGAGCCTCTAAAGAGGGCCTGGCGTAATGAAAAGGCTGCTCCTGAAATTCTACCCTTTGAGGC
ATCTCTAGTTGAGAGAATCAAAGGACAGATTCAATTAATGGAAGATGCTATAGAGGAAGATTCAAGAAGTGGTATTGATCCGCTAATTGTATCACTCTATCAAATGGATT
TAGATAGGACACAGTTCTTATTGAGATCATATATTAGGGTTCGCTTGCAGAAGATCGAGAAGTACATGTTCTATATCTTGAAGTCAGATGAACTTTCCAGGCGTCTTTCT
GAAGAAGAGAGAAGATTTACTGATAGCCACCATTTTGTTGAAACCCTAGCCGCCGTCGCCGCCGGAACCCTAGCCACCACTCTTGATTGGTGCATCCTACTTCCAGCGCC
AGTGGCTCCATGTTTCTCACTTGACCCATACACTTTCTTCATCATAGTCGGAGATCTTCGTGTTCATCTTCGACCATAG
Protein sequenceShow/hide protein sequence
MSQTDDFETLPQMTDVEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRVRLQKIEKYMFYILKSDELSRRLS
EEERRFTDSHHFVETLAAVAAGTLATTLDWCILLPAPVAPCFSLDPYTFFIIVGDLRVHLRP