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Lag0000908 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000908
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr4:19413280..19416385
RNA-Seq ExpressionLag0000908
SyntenyLag0000908
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038880112.1 transcription factor IIIB 70 kDa subunit-like isoform X1 [Benincasa hispida]9.6e-0457.89Show/hide
Query:  GFKDSLKI-SFSLGLISRFQAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLENGA
        G  DS  I  F  GL      EK  DN+HADASK V SKE  AK AADEQRGL++GA
Subjt:  GFKDSLKI-SFSLGLISRFQAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLENGA
XP_038880114.1 transcription factor IIIB 90 kDa subunit-like isoform X3 [Benincasa hispida]9.6e-0457.89Show/hide
Query:  GFKDSLKI-SFSLGLISRFQAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLENGA
        G  DS  I  F  GL      EK  DN+HADASK V SKE  AK AADEQRGL++GA
Subjt:  GFKDSLKI-SFSLGLISRFQAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLENGA
XP_038880116.1 transcription factor IIIB 90 kDa subunit-like isoform X4 [Benincasa hispida]9.6e-0457.89Show/hide
Query:  GFKDSLKI-SFSLGLISRFQAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLENGA
        G  DS  I  F  GL      EK  DN+HADASK V SKE  AK AADEQRGL++GA
Subjt:  GFKDSLKI-SFSLGLISRFQAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLENGA
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCCCTGAATCTCTTCTCACTCACTCTCTACTCAGTACTCTCTCTCCCCAAATCTCTTCTCTCTCACTCTCATCGTCGAACAAGAAATCAACATCATCCTCTTC
AATCTTTGGTTGCAAAATCGTCAGCTTGGTCAAGGGCAACAATATCACAGATTCAATCCACCAGAGGATAGAGCGTCGCCTCACAGCTCTCAGTAATGTCAATCGCCATC
TCAAGCTCAATTTTTTCACCGAGCCCTTTGTATCTTGGCAAGAAGTAGAATCTTATATAAGAAGTTTATTTGCTTTGAAGAAGATGAAGACTTCATCTCATAATGGAAAG
CATTGTGGTTGGATAGGATTTAAAGATTCTTTGAAGATTAGTTTCTCCCTTGGTTTGATCAGTAGATTTCAAGCTGAAAAAGAAGTAGACAATATACATGCGGATGCATC
AAAAGTTGTTTGTTCAAAAGAAGTTGTAGCCAAGGGAGCTGCAGATGAGCAAAGAGGACTTGAGAACGGTGCTCTAATAAAGTTGGAGCTGATGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCCCTGAATCTCTTCTCACTCACTCTCTACTCAGTACTCTCTCTCCCCAAATCTCTTCTCTCTCACTCTCATCGTCGAACAAGAAATCAACATCATCCTCTTC
AATCTTTGGTTGCAAAATCGTCAGCTTGGTCAAGGGCAACAATATCACAGATTCAATCCACCAGAGGATAGAGCGTCGCCTCACAGCTCTCAGTAATGTCAATCGCCATC
TCAAGCTCAATTTTTTCACCGAGCCCTTTGTATCTTGGCAAGAAGTAGAATCTTATATAAGAAGTTTATTTGCTTTGAAGAAGATGAAGACTTCATCTCATAATGGAAAG
CATTGTGGTTGGATAGGATTTAAAGATTCTTTGAAGATTAGTTTCTCCCTTGGTTTGATCAGTAGATTTCAAGCTGAAAAAGAAGTAGACAATATACATGCGGATGCATC
AAAAGTTGTTTGTTCAAAAGAAGTTGTAGCCAAGGGAGCTGCAGATGAGCAAAGAGGACTTGAGAACGGTGCTCTAATAAAGTTGGAGCTGATGGCCTAG
Protein sequenceShow/hide protein sequence
MSLPESLLTHSLLSTLSPQISSLSLSSSNKKSTSSSSIFGCKIVSLVKGNNITDSIHQRIERRLTALSNVNRHLKLNFFTEPFVSWQEVESYIRSLFALKKMKTSSHNGK
HCGWIGFKDSLKISFSLGLISRFQAEKEVDNIHADASKVVCSKEVVAKGAADEQRGLENGALIKLELMA