CuGenDBv2

Gene ID	Lag0000988
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	chr4:21660935..21661665
RNA-Seq Expression	Lag0000988
Synteny	Lag0000988
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009507 - chloroplast (cellular component) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG9438488.1 hypothetical protein H6P81_021569 [Aristolochia fimbriata]

3.8e-34

92.31

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Query:  HRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        + +KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  HRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

KAG9438608.1 hypothetical protein H6P81_021450 [Aristolochia fimbriata]

3.8e-34

92.31

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Query:  HRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        + +KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  HRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

YP_009092299.1 photosystem II CP43 chlorophyll apoprotein [Macadamia integrifolia]

1.9e-33

94.67

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Query:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

YP_009390805.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum]

1.9e-33

94.67

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Query:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

YP_010048629.1 photosystem II CP43 chlorophyll apoprotein [Quercus acuta]

1.3e-34

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Query:  TVHRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        T++ ++RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  TVHRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

TrEMBL top hits

e value

%identity

Alignment

A0A096X881 Photosystem II CP43 reaction center protein

9.2e-34

94.67

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Query:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

A0A1Z1GAL1 Photosystem II CP43 reaction center protein

9.2e-34

94.67

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Query:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

A0A481Y4B2 Photosystem II CP43 reaction center protein

9.2e-34

94.67

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Query:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

A0A7T0KAU9 Photosystem II CP43 chlorophyll apoprotein

6.4e-35

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Query:  TVHRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        T++ ++RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  TVHRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

H6TH94 Photosystem II CP43 (Fragment)

9.2e-34

94.67

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Query:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

SwissProt top hits

e value

%identity

Alignment

A6MM32 Photosystem II CP43 reaction center protein

3.3e-36

95.95

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Query:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

A9LYI1 Photosystem II CP43 reaction center protein

3.3e-36

95.95

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Query:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

Q3V538 Photosystem II CP43 reaction center protein

3.3e-36

95.95

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Query:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

Q70Y07 Photosystem II CP43 reaction center protein

3.3e-36

95.95

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Query:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

Q7YJX6 Photosystem II CP43 reaction center protein

3.3e-36

95.95

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Query:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

2.6e-36

94.59

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Query:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI
        RRFY VETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP+
Subjt:  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPI

ATCG00680.1 photosystem II reaction center protein B

3.6e-06

39.29

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Query:  GFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPIIG-FWR
        G  W+  +   LN  G+LL  H+ H  L+  WAG+M L+E+A F P  P++   WR
Subjt:  GFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPIIG-FWR

Sequences

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CDS sequence

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ATGTTTTCTTTCTGTGAGAATGCCGTAGGACTCCAGGAATTTTGGAAGCTGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACTGTCCACCG
AGTGAAACGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGAC
AACTCAATTTATCCGGTAAACTACTAGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAG
AAGCCCATTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGGACGATTCCACAGCGTAGAGCTTCAATCAATAGGCCATTTCAGTCTTCTTTTATCCTCAG
ACCCGCTCCCCTTTCTTTTCCAATTGGGCTTTGTGCCACGCCACTTCGGAGAGTGAAACGAAGGAAAAGCCTGACCTGA

mRNA sequence

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Protein sequence

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MFSFCENAVGLQEFWKLNMLKRCLPKAFRFDHSTVHRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE
KPIIGFWRYLSCTSGTRTIPQRRASINRPFQSSFILRPAPLSFPIGLCATPLRRVKRRKSLT

Lag0000988 (gene) of Sponge gourd (AG-4) v1 genome