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Lag0000996 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000996
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:21676901..21677427
RNA-Seq ExpressionLag0000996
SyntenyLag0000996
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN64138.1 hypothetical protein VITISV_032076 [Vitis vinifera]4.8e-0451.16Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM  +FP  LSGAA RWFT ++ S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

RVW13347.1 hypothetical protein CK203_095761 [Vitis vinifera]3.7e-0453.49Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM  +FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

RVW44283.1 hypothetical protein CK203_070989 [Vitis vinifera]3.7e-0453.49Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM  +FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

RVW83099.1 hypothetical protein CK203_040750 [Vitis vinifera]4.8e-0453.49Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM   FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

XP_034710520.1 uncharacterized protein LOC117933245 [Vitis riparia]2.1e-0453.49Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM  +FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

TrEMBL top hitse value%identityAlignment
A0A438BQW5 Retrotrans_gag domain-containing protein1.8e-0453.49Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM  +FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

A0A438E972 Retrotrans_gag domain-containing protein1.8e-0453.49Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM  +FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

A0A438G6Y3 Retrotrans_gag domain-containing protein2.3e-0445.45Show/hide
Query:  WLTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        W+   Q+  +FP  LSGAA RWF  ++ S L++W+D+A  FL Q
Subjt:  WLTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

A0A438HFE2 Retrotrans_gag domain-containing protein2.3e-0453.49Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM   FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

A5C2K5 Uncharacterized protein2.3e-0451.16Show/hide
Query:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ
        L + QM  +FP  LSGAA RWFT ++ S  ++WDD+A  FL+Q
Subjt:  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAACGGAGGAGGTGTTCATGCCTGAAGTTTCTCATCAAGTGGAAGGTTCGGCTTAAAGACATTGGTTGGCTCACTCAGAAGCAGATGGCCAAAATCTTTCCTAG
AATTCTTAGTGGGGCCGCTGGGCGATGGTTCACACAGATTGACAAATCTACCCTTAAATCCTGGGATGACATCGCCAATGCTTTTTTGAAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAACGGAGGAGGTGTTCATGCCTGAAGTTTCTCATCAAGTGGAAGGTTCGGCTTAAAGACATTGGTTGGCTCACTCAGAAGCAGATGGCCAAAATCTTTCCTAG
AATTCTTAGTGGGGCCGCTGGGCGATGGTTCACACAGATTGACAAATCTACCCTTAAATCCTGGGATGACATCGCCAATGCTTTTTTGAAACAATAG
Protein sequenceShow/hide protein sequence
MQKRRRCSCLKFLIKWKVRLKDIGWLTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ