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Lag0000997 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000997
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:21677581..21678625
RNA-Seq ExpressionLag0000997
SyntenyLag0000997
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN83305.1 hypothetical protein VITISV_008192 [Vitis vinifera]1.3e-0850.55Show/hide
Query:  MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPFD
        MIEPT SSWDPSL +TP GE+GET GRDM GIRET  + P    H+    S      T  QPL                SFTLA IPQPFD
Subjt:  MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPFD

KAF5931647.1 hypothetical protein HYC85_027818 [Camellia sinensis]5.3e-0542Show/hide
Query:  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP
        +KP  P+   PL   L   +   K   Y +   H       LRH+I  L++K  I PP  ++PNVTTNPLPTH   PPP  IN I+   +S+DPS+ ITP
Subjt:  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP

KAF5932778.1 hypothetical protein HYC85_028949 [Camellia sinensis]1.1e-0534.24Show/hide
Query:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-
        ++G  GS  Q     P+G++           ALG   K +       +KP  PR   PL   L   +   K   Y +   H       LRH+I  L++K 
Subjt:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-

Query:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEFTCSG
         I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+   K E      TD   M+ I  TR  P +  T  G
Subjt:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEFTCSG

KAF5933751.1 hypothetical protein HYC85_029922 [Camellia sinensis]6.9e-0534.46Show/hide
Query:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-
        ++GT GS  Q     P+G++           ALG   K + +  L    P  P   PP        +   K   Y +   H       LRH+I  L++K 
Subjt:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-

Query:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA
         I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+
Subjt:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA

KAF5934569.1 hypothetical protein HYC85_030740 [Camellia sinensis]9.0e-0535.14Show/hide
Query:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-
        ++G  GS  Q     P+G++           ALG   K +       +KP  PR   PL   L   +   K   Y +   H       LRH+I  L++K 
Subjt:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-

Query:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA
         I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+
Subjt:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA

TrEMBL top hitse value%identityAlignment
A0A7J7FU58 Ribonuclease H2.5e-0542Show/hide
Query:  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP
        +KP  P+   PL   L   +   K   Y +   H       LRH+I  L++K  I PP  ++PNVTTNPLPTH   PPP  IN I+   +S+DPS+ ITP
Subjt:  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP

A0A7J7FYW8 Uncharacterized protein5.1e-0634.24Show/hide
Query:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-
        ++G  GS  Q     P+G++           ALG   K +       +KP  PR   PL   L   +   K   Y +   H       LRH+I  L++K 
Subjt:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-

Query:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEFTCSG
         I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+   K E      TD   M+ I  TR  P +  T  G
Subjt:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPAG-EKGE------TDGRDMIGIRETRLSPHLEFTCSG

A0A7J7G0M1 Reverse transcriptase3.3e-0534.46Show/hide
Query:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-
        ++GT GS  Q     P+G++           ALG   K + +  L    P  P   PP        +   K   Y +   H       LRH+I  L++K 
Subjt:  YNGTHGS--QVKEADPKGKKI----------ALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK-

Query:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA
         I PP  ++PNVTTNPLP H   PPP  IN I+   +S+DPS+ ITP+
Subjt:  -IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITPA

A0A7J7G0P3 Retrotrans_gag domain-containing protein4.3e-0537.68Show/hide
Query:  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP
        +KP  PR   PL   L       K   Y +   H       LRH+I  L++K  I PP   +PNVTTNPLPTH   PPP  +N I+    S+DPS+ ITP
Subjt:  VKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPH-------LRHQILFLLEK--IEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSSWDPSLLITP

Query:  AG-EKGE------TDGRDMIGIRETRLSPHLEFTCSGG
            K E      TD   M+ I  T+  P +     GG
Subjt:  AG-EKGE------TDGRDMIGIRETRLSPHLEFTCSGG

A5BJ71 Uncharacterized protein6.5e-0950.55Show/hide
Query:  MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPFD
        MIEPT SSWDPSL +TP GE+GET GRDM GIRET  + P    H+    S      T  QPL                SFTLA IPQPFD
Subjt:  MIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRET-RLSP----HLEFTCSGGMISTTISQPLNNPSNYSRKAQKVKHLSFTLARIPQPFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAA
TGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAA
AGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTC
TTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCC
GACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACC
TCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACC
CTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATA
CGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCAT
TGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAATAACATGAGTAGGCAATACCATTACTATTTTGATTTCCAAGGGATGATTACTTATGACTCTTTGATTGAAGCAGCCACTCGTATTGAAGATGCTATCTACAA
TGGGACTCATGGATCACAGGTCAAAGAGGCAGATCCAAAAGGAAAGAAGATAGCCCTGGGGGGAACAAGCAAGAACAGTGAAGTCAATGTCTTGTCTGACGTAAAGCCAA
AGACACCCAGGACTTTCCCTCCGTTAGGCATAACTCTCGCCGCGCCTTGGAAAAGCTTCAAAAGCATGGTGTACTCACGCCTCTTCCCCCATCTCCGCCACCAGATCCTC
TTCCTCCTAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCC
GACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACC
TCGAGTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAAGCCCAGAAAGTGAAACATTTATCCTTTACC
CTCGCTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCCCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATA
CGGCACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCAGGGCCAAACACATGTGTCAT
TGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
Protein sequenceShow/hide protein sequence
MINNMSRQYHYYFDFQGMITYDSLIEAATRIEDAIYNGTHGSQVKEADPKGKKIALGGTSKNSEVNVLSDVKPKTPRTFPPLGITLAAPWKSFKSMVYSRLFPHLRHQIL
FLLEKIEPPRANRPNVTTNPLPTHAVPPPANINMIEPTFSSWDPSLLITPAGEKGETDGRDMIGIRETRLSPHLEFTCSGGMISTTISQPLNNPSNYSRKAQKVKHLSFT
LARIPQPFDESPSCSDPTDLKPLPASLWMDSDELDQYGTNDDMDFVNNEEAQHMASKSHRDPVLRMQGQTHVSLDTSPSPPVKIIFHIRMAKTIT