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Lag0000998 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000998
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:21682356..21683762
RNA-Seq ExpressionLag0000998
SyntenyLag0000998
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER39086.1 ribosomal protein S12 [Striga asiatica]3.8e-1197.22Show/hide
Query:  CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

GFS28256.1 hypothetical protein Acr_00g0000840 [Actinidia rufa]2.9e-1142.99Show/hide
Query:  PDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQ----------------------------ECAFI-DVVDWRQPYIEYLTKGTLPDDRYEA
        P G LARCLG EEA  RL ++H+K CG    V+LYRR+QRQ                            EC F+ +V DWRQ YI+YL +G+LP DR +A
Subjt:  PDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQ----------------------------ECAFI-DVVDWRQPYIEYLTKGTLPDDRYEA

Query:  NKLKKIA
         ++KK A
Subjt:  NKLKKIA

KAF7129158.1 hypothetical protein RHSIM_Rhsim10G0123600 [Rhododendron simsii]3.8e-1143.81Show/hide
Query:  GVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQ----------------------------ECAFIDV-VDWRQPYIEYLTKGTLPDDRYEANK
        G+LARC+G EEA  +++EVH++ CG T  V+LYRRLQRQ                            EC FI V  DWR+PYI++LT GTLP DR +   
Subjt:  GVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQ----------------------------ECAFIDV-VDWRQPYIEYLTKGTLPDDRYEANK

Query:  LKKIA
        +KK A
Subjt:  LKKIA

KJB09732.1 hypothetical protein B456_001G160800 [Gossypium raimondii]1.1e-1366.2Show/hide
Query:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQECAFIDVVDWRQPYIEYLTKGTLPDDRYE
        M DGVLARCLGVEEAAKRLEEVHDKVCGTT PVNLYRRLQRQ   + D+    +   E   K T   DR E
Subjt:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQECAFIDVVDWRQPYIEYLTKGTLPDDRYE

XP_030930582.1 uncharacterized protein LOC115956301 [Quercus lobata]1.5e-1240.74Show/hide
Query:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQR-----------------------------QECAFIDVVDWRQPYIEYLTKGTLPDDRYE
        +P GVLARCL   E+ +RL+EVH+K CG +  V+LYRRLQR                             + CA     DWR P++EYL +G LPD+  E
Subjt:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQR-----------------------------QECAFIDVVDWRQPYIEYLTKGTLPDDRYE

Query:  ANKLKKIA
        A +LKK+A
Subjt:  ANKLKKIA

TrEMBL top hitse value%identityAlignment
A0A0D2LZA6 Uncharacterized protein5.1e-1466.2Show/hide
Query:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQECAFIDVVDWRQPYIEYLTKGTLPDDRYE
        M DGVLARCLGVEEAAKRLEEVHDKVCGTT PVNLYRRLQRQ   + D+    +   E   K T   DR E
Subjt:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQECAFIDVVDWRQPYIEYLTKGTLPDDRYE

A0A2N9EW07 Uncharacterized protein2.4e-1148.75Show/hide
Query:  PDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQE--CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        P GVLARC+ +EEA ++L EVH+K  G    V+LYRRLQR E  CA     DW  P++EYL +G L  +  +A +LK++A
Subjt:  PDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQE--CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

A0A2N9J8U0 Ribonuclease H1.6e-1250.63Show/hide
Query:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        +P GVLARC+ ++EAAK+L EVH+K C     V+ YRRLQR   A     DWR P++EYL +  LP  R  A +LKK+A
Subjt:  MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

A0A5A7Q2J0 Ribosomal protein S121.8e-1197.22Show/hide
Query:  CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

A0A7J0D7F1 Uncharacterized protein1.4e-1142.99Show/hide
Query:  PDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQ----------------------------ECAFI-DVVDWRQPYIEYLTKGTLPDDRYEA
        P G LARCLG EEA  RL ++H+K CG    V+LYRR+QRQ                            EC F+ +V DWRQ YI+YL +G+LP DR +A
Subjt:  PDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQ----------------------------ECAFI-DVVDWRQPYIEYLTKGTLPDDRYEA

Query:  NKLKKIA
         ++KK A
Subjt:  NKLKKIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGATGGGGTCTTAGCTCGGTGCCTTGGCGTTGAAGAAGCAGCAAAGAGACTTGAAGAAGTTCATGATAAGGTCTGTGGGACAACAACACCGGTAAACCTCTACAG
AAGATTGCAAAGACAAGAATGTGCATTTATCGATGTAGTGGATTGGAGACAGCCATATATCGAGTATCTGACAAAAGGAACCTTACCGGATGATAGATACGAAGCGAATA
AGCTAAAGAAGATAGCCAACCTAAAGGTGATGAAGCGATGGAGATCATGCACCAATCACATGCTGGCATCTTGGCGAGCACCAAGGAGGGCGAAAGCTGTTTCAGTATTT
GCTGCAATCATCAAAAAAAGGGAAATCCCGGCGGGACCCTTGTTCGCCGTTACTGGAAGACACGCGTCAAAACCAAATGACTCAGGGCATCCAATCGGCAGCGTTGGGAG
ACCTCACCTCCTGGGTCGACGTGTGGAGTTTGCTGGTGAAGTTCCTGGTACGTGTGACCTGCCTGCTAGGGAAACTGGCTACTGGATTCGTGCCCAGCGCACCTTACCCT
TTGGAGGCGCCCGGTTGATTGATCTCTGGAGACTCCGCTTTCGCTCGGGTAGGCTCAAGATCAGTATACTTAAAAAAAGAAATTTTCTGTTGGGTGCTTTCTTTCTTTTC
ACTTTTCTATTCGCTTGTTTGGTTCCTCGCCTGCGGGATGCTCGTTGGTTCTACGGTTGCCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGATGGGGTCTTAGCTCGGTGCCTTGGCGTTGAAGAAGCAGCAAAGAGACTTGAAGAAGTTCATGATAAGGTCTGTGGGACAACAACACCGGTAAACCTCTACAG
AAGATTGCAAAGACAAGAATGTGCATTTATCGATGTAGTGGATTGGAGACAGCCATATATCGAGTATCTGACAAAAGGAACCTTACCGGATGATAGATACGAAGCGAATA
AGCTAAAGAAGATAGCCAACCTAAAGGTGATGAAGCGATGGAGATCATGCACCAATCACATGCTGGCATCTTGGCGAGCACCAAGGAGGGCGAAAGCTGTTTCAGTATTT
GCTGCAATCATCAAAAAAAGGGAAATCCCGGCGGGACCCTTGTTCGCCGTTACTGGAAGACACGCGTCAAAACCAAATGACTCAGGGCATCCAATCGGCAGCGTTGGGAG
ACCTCACCTCCTGGGTCGACGTGTGGAGTTTGCTGGTGAAGTTCCTGGTACGTGTGACCTGCCTGCTAGGGAAACTGGCTACTGGATTCGTGCCCAGCGCACCTTACCCT
TTGGAGGCGCCCGGTTGATTGATCTCTGGAGACTCCGCTTTCGCTCGGGTAGGCTCAAGATCAGTATACTTAAAAAAAGAAATTTTCTGTTGGGTGCTTTCTTTCTTTTC
ACTTTTCTATTCGCTTGTTTGGTTCCTCGCCTGCGGGATGCTCGTTGGTTCTACGGTTGCCCGTGA
Protein sequenceShow/hide protein sequence
MPDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQRQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIANLKVMKRWRSCTNHMLASWRAPRRAKAVSVF
AAIIKKREIPAGPLFAVTGRHASKPNDSGHPIGSVGRPHLLGRRVEFAGEVPGTCDLPARETGYWIRAQRTLPFGGARLIDLWRLRFRSGRLKISILKKRNFLLGAFFLF
TFLFACLVPRLRDARWFYGCP