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Lag0001010 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001010
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase
Genome locationchr4:21719085..21719477
RNA-Seq ExpressionLag0001010
SyntenyLag0001010
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR002092 - DNA-directed RNA polymerase, phage-type
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS28696.1 hypothetical protein Acr_00g0003340 [Actinidia rufa]6.5e-3461.79Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MPS L S+NI+DV  +LREF+++D V+N LCS+++LL TLCKNIQRA  E+L++ LA AYDGY F LPAF+DFRGRIYRSGILHFH+RDLARSLI+FAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEKDFSNNANCSIAFLF
        +S    S  D+ N    + A  F
Subjt:  SSKTIGSEKDFSNNANCSIAFLF
GFS28697.1 hypothetical protein Acr_00g0003350 [Actinidia rufa]6.5e-3461.79Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MPS L S+NI+DV  +LREF+++D V+N LCS+++LL TLCKNIQRA  E+L++ LA AYDGY F LPAF+DFRGRIYRSGILHFH+RDLARSLI+FAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEKDFSNNANCSIAFLF
        +S    S  D+ N    + A  F
Subjt:  SSKTIGSEKDFSNNANCSIAFLF
KAF3452229.1 hypothetical protein FNV43_RR08327 [Rhamnella rubrinervis]1.1e-3365.79Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MP  L SMNI+DV   LRE +++D+V+  LCS+SELL TLCKNIQR+R E+L++ LAKAYDGYQF LPAF+DFRGRIYR GILHFH+RDLARS+IVFAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEKDFSNN
          KT     D ++N
Subjt:  SSKTIGSEKDFSNN
KUM50494.1 RNA polymerase [Picea glauca]2.2e-3466.97Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MP  L+SMNI+DV  +LREF+++D V+  LCS+SELL+TL KNIQR+R E L++ LA+AYDGY FDLPAF+DFRGRIYRSG+LHFH+RDLARSLIVFAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEK
         S+    +K
Subjt:  SSKTIGSEK
QHR90162.1 putative RNA polymerase [Picea sitchensis]2.2e-3466.97Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MP  L+SMNI+DV  +LREF+++D V+  LCS+SELL+TL KNIQR+R E L++ LA+AYDGY FDLPAF+DFRGRIYRSG+LHFH+RDLARSLIVFAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEK
         S+    +K
Subjt:  SSKTIGSEK
TrEMBL top hitse value%identityAlignment
A0A101M3N5 DNA-directed RNA polymerase1.1e-3466.97Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MP  L+SMNI+DV  +LREF+++D V+  LCS+SELL+TL KNIQR+R E L++ LA+AYDGY FDLPAF+DFRGRIYRSG+LHFH+RDLARSLIVFAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEK
         S+    +K
Subjt:  SSKTIGSEK
A0A4D6FUD7 DNA-directed RNA polymerase5.9e-3366.35Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MP  L S+NI+DV  +LREF+++D V+N LCS+++LL TLCKNIQRA  E+L++ LA AYDGY F LPAF+DFRGRIYRSGILHFH+RDLA+SLI+FAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKT
        +S +
Subjt:  SSKT
A0A6B9XVF7 DNA-directed RNA polymerase1.1e-3466.97Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MP  L+SMNI+DV  +LREF+++D V+  LCS+SELL+TL KNIQR+R E L++ LA+AYDGY FDLPAF+DFRGRIYRSG+LHFH+RDLARSLIVFAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEK
         S+    +K
Subjt:  SSKTIGSEK
A0A7J0D761 Multifunctional fusion protein3.1e-3461.79Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MPS L S+NI+DV  +LREF+++D V+N LCS+++LL TLCKNIQRA  E+L++ LA AYDGY F LPAF+DFRGRIYRSGILHFH+RDLARSLI+FAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEKDFSNNANCSIAFLF
        +S    S  D+ N    + A  F
Subjt:  SSKTIGSEKDFSNNANCSIAFLF
A0A7J0D8S5 Multifunctional fusion protein3.1e-3461.79Show/hide
Query:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD
        MPS L S+NI+DV  +LREF+++D V+N LCS+++LL TLCKNIQRA  E+L++ LA AYDGY F LPAF+DFRGRIYRSGILHFH+RDLARSLI+FAD 
Subjt:  MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADD

Query:  SSKTIGSEKDFSNNANCSIAFLF
        +S    S  D+ N    + A  F
Subjt:  SSKTIGSEKDFSNNANCSIAFLF
SwissProt top hitse value%identityAlignment
P10581 Probable DNA-directed RNA polymerase1.3e-1340Show/hide
Query:  PSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVF--AD
        P  L     ++   +L     +   ++T+  YSEL   L KNI  +  E   + +A+AY  Y+   P F+DFRGR YR G  HFH+RDL RSLI+F  +D
Subjt:  PSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVF--AD

Query:  DS-SKTIGSE
        DS + TI S+
Subjt:  DS-SKTIGSE
P33539 Probable DNA-directed RNA polymerase6.6e-0541.94Show/hide
Query:  MLNLAKAYDGYQFDLPAFMDFRGRIY-RSGILHFHDRDLARSLIVFADDSSKTIGSEKDFSN
        +++LA  Y   +F LP ++DFRGR+Y  S  + +   DLARSLI+FAD       S K+  N
Subjt:  MLNLAKAYDGYQFDLPAFMDFRGRIY-RSGILHFHDRDLARSLIVFADDSSKTIGSEKDFSN
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAGTATTCTCACTTCAATGAACATCCAAGATGTTGGAACCATACTTCGAGAATTCTACTTGAGGGATAATGTTGTTAACACATTATGTAGTTATTCCGAATTGTT
ACAAACTTTATGTAAGAACATACAGCGTGCTCGCACAGAAGAATTGATGCTCAATCTGGCTAAAGCCTACGATGGCTATCAGTTTGATTTGCCTGCCTTTATGGATTTCC
GTGGTCGAATCTACCGCAGTGGTATCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCCTGATAGTCTTTGCGGATGATAGCAGCAAAACAATCGGCAGTGAGAAGGAT
TTCAGCAACAATGCTAATTGTTCTATTGCGTTCCTTTTCTTTCGAGACCATCCAAGAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAGTATTCTCACTTCAATGAACATCCAAGATGTTGGAACCATACTTCGAGAATTCTACTTGAGGGATAATGTTGTTAACACATTATGTAGTTATTCCGAATTGTT
ACAAACTTTATGTAAGAACATACAGCGTGCTCGCACAGAAGAATTGATGCTCAATCTGGCTAAAGCCTACGATGGCTATCAGTTTGATTTGCCTGCCTTTATGGATTTCC
GTGGTCGAATCTACCGCAGTGGTATCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCCTGATAGTCTTTGCGGATGATAGCAGCAAAACAATCGGCAGTGAGAAGGAT
TTCAGCAACAATGCTAATTGTTCTATTGCGTTCCTTTTCTTTCGAGACCATCCAAGAGGTTAA
Protein sequenceShow/hide protein sequence
MPSILTSMNIQDVGTILREFYLRDNVVNTLCSYSELLQTLCKNIQRARTEELMLNLAKAYDGYQFDLPAFMDFRGRIYRSGILHFHDRDLARSLIVFADDSSKTIGSEKD
FSNNANCSIAFLFFRDHPRG