CuGenDBv2

Gene ID	Lag0001011
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase
Genome location	chr4:21719572..21720789
RNA-Seq Expression	Lag0001011
Synteny	Lag0001011
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR002092 - DNA-directed RNA polymerase, phage-type IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAB4263363.1 unnamed protein product [Prunus armeniaca]

2.2e-117

61.75

Show/hide

Query:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR
        L  I  IP+TQDASASAYQI+SYFLLDE+LA RTNLI S DGK QDVYSF+L++L+VFMK EL N+ +LS IVC    R LVKGIFMP IYGKT +S A 
Subjt:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR

Query:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR
        DL++ L  +IT KE   +A +CFKFW T+Y + ECL++LI HIGWIASA +SPV+Y +   TTVQDYM M+PIN+W +D LH+KRR+VTLRVSSSKRDRR
Subjt:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR

Query:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL
        KT ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA YS  LP  Y + IC MGPPL ILNEFI  N+          G    Y    VI  
Subjt:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL

Query:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ
        +IL   L   +P E  SKKM++TW  +I+ I+TSYENYTR +CGD    NP     AH +KWD F+
Subjt:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ

CAB4289961.1 unnamed protein product [Prunus armeniaca]

2.2e-117

61.75

Show/hide

Query:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR
        L  I  IP+TQDASASAYQI+SYFLLDE+LA RTNLI S DGK QDVYSF+L++L+VFMK EL N+ +LS IVC    R LVKGIFMP IYGKT +S A 
Subjt:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR

Query:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR
        DL++ L  +IT KE   +A +CFKFW T+Y + ECL++LI HIGWIASA +SPV+Y +   TTVQDYM M+PIN+W +D LH+KRR+VTLRVSSSKRDRR
Subjt:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR

Query:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL
        KT ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA YS  LP  Y + IC MGPPL ILNEFI  N+          G    Y    VI  
Subjt:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL

Query:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ
        +IL   L   +P E  SKKM++TW  +I+ I+TSYENYTR +CGD    NP     AH +KWD F+
Subjt:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ

CAB4293876.1 unnamed protein product [Prunus armeniaca]

2.2e-117

61.75

Show/hide

Query:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR
        L  I  IP+TQDASASAYQI+SYFLLDE+LA RTNLI S DGK QDVYSF+L++L+VFMK EL N+ +LS IVC    R LVKGIFMP IYGKT +S A 
Subjt:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR

Query:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR
        DL++ L  +IT KE   +A +CFKFW T+Y + ECL++LI HIGWIASA +SPV+Y +   TTVQDYM M+PIN+W +D LH+KRR+VTLRVSSSKRDRR
Subjt:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR

Query:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL
        KT ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA YS  LP  Y + IC MGPPL ILNEFI  N+          G    Y    VI  
Subjt:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL

Query:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ
        +IL   L   +P E  SKKM++TW  +I+ I+TSYENYTR +CGD    NP     AH +KWD F+
Subjt:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ

QHR90162.1 putative RNA polymerase [Picea sitchensis]

3.8e-117

60.27

Show/hide

Query:  IMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR
        I +IP TQDASASA+QI+SYFLLD  LA RTNLI S DGK QDVYS++L++L+VFM  E++N +NLS IVC    R LVKGIFMP IYGKT +S ARDL+
Subjt:  IMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR

Query:  EPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTA
        + L H+IT KES  +A +CFKFW T++  MECL++LI HIGWIASA + PV+Y + Y TTVQDYM+M PINIW +D LH+KR +VTLRVSSSKRDRRKT 
Subjt:  EPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTA

Query:  ISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPLDIL
        ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA Y+  LP+ Y + IC MGPPL ILNEFI  N+          G    Y    VI  +IL
Subjt:  ISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPLDIL

Query:  EKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD-SNP------EAHVKKWDNFQ-RLIRQK
           L   +P E  SK+M++TW  +I+ I+TSYENYTR +CGD  +P       AH +KW+ FQ +L+R++
Subjt:  EKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD-SNP------EAHVKKWDNFQ-RLIRQK

XP_017985382.1 PREDICTED: probable DNA-directed RNA polymerase [Theobroma cacao]

3.8e-117

61.22

Show/hide

Query:  IPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLREPL
        +PI QDASASAYQI+SYFLLDE+LAKRTNLI S DG+ QDVYSF+L+EL+ FMK EL N  NLS IVC   +R +VKGIFMP IYGKT +S A DL+  L
Subjt:  IPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLREPL

Query:  GHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTAIST
         H+IT KE   IA +CFKFW TKY  + CL++LI HIGWI SA NSPV+Y + + TTVQDYM+MEPINIW++D+LH+KRR+VTLRVSSSKRDRRKT IST
Subjt:  GHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTAIST

Query:  FVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV------GGNLREYSTSNVIPLDILEKCLNE
        FVNFIHQ+DA+IAM VVE ML  GAPIYTVHDNFI+TA YSDL+P  YS  IC M PPL ++NEFI  NV      G + +       I  ++L   L  
Subjt:  FVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV------GGNLREYSTSNVIPLDILEKCLNE

Query:  KIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNPE----AHVKKWDNFQRLIR
         +P E  SKKM++TW  +I+ I+TSY+NYTR +CGD    NP     AH KKW+ F+  +R
Subjt:  KIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNPE----AHVKKWDNFQRLIR

TrEMBL top hits

e value

%identity

Alignment

A0A101M3N5 DNA-directed RNA polymerase

1.9e-117

60.27

Show/hide

Query:  IMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR
        I +IP TQDASASA+QI+SYFLLD  LA RTNLI S DGK QDVYS++L++L+VFM  E++N +NLS IVC    R LVKGIFMP IYGKT +S ARDL+
Subjt:  IMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR

Query:  EPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTA
        + L H+IT KES  +A +CFKFW T++  MECL++LI HIGWIASA + PV+Y + Y TTVQDYM+M PINIW +D LH+KR +VTLRVSSSKRDRRKT 
Subjt:  EPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTA

Query:  ISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPLDIL
        ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA Y+  LP+ Y + IC MGPPL ILNEFI  N+          G    Y    VI  +IL
Subjt:  ISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPLDIL

Query:  EKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD-SNP------EAHVKKWDNFQ-RLIRQK
           L   +P E  SK+M++TW  +I+ I+TSYENYTR +CGD  +P       AH +KW+ FQ +L+R++
Subjt:  EKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD-SNP------EAHVKKWDNFQ-RLIRQK

A0A6B9XVF7 DNA-directed RNA polymerase

1.9e-117

60.27

Show/hide

Query:  IMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR
        I +IP TQDASASA+QI+SYFLLD  LA RTNLI S DGK QDVYS++L++L+VFM  E++N +NLS IVC    R LVKGIFMP IYGKT +S ARDL+
Subjt:  IMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR

Query:  EPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTA
        + L H+IT KES  +A +CFKFW T++  MECL++LI HIGWIASA + PV+Y + Y TTVQDYM+M PINIW +D LH+KR +VTLRVSSSKRDRRKT 
Subjt:  EPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTA

Query:  ISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPLDIL
        ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA Y+  LP+ Y + IC MGPPL ILNEFI  N+          G    Y    VI  +IL
Subjt:  ISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPLDIL

Query:  EKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD-SNP------EAHVKKWDNFQ-RLIRQK
           L   +P E  SK+M++TW  +I+ I+TSYENYTR +CGD  +P       AH +KW+ FQ +L+R++
Subjt:  EKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD-SNP------EAHVKKWDNFQ-RLIRQK

A0A6J5VPQ6 Multifunctional fusion protein

1.1e-117

61.75

Show/hide

Query:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR
        L  I  IP+TQDASASAYQI+SYFLLDE+LA RTNLI S DGK QDVYSF+L++L+VFMK EL N+ +LS IVC    R LVKGIFMP IYGKT +S A 
Subjt:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR

Query:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR
        DL++ L  +IT KE   +A +CFKFW T+Y + ECL++LI HIGWIASA +SPV+Y +   TTVQDYM M+PIN+W +D LH+KRR+VTLRVSSSKRDRR
Subjt:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR

Query:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL
        KT ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA YS  LP  Y + IC MGPPL ILNEFI  N+          G    Y    VI  
Subjt:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL

Query:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ
        +IL   L   +P E  SKKM++TW  +I+ I+TSYENYTR +CGD    NP     AH +KWD F+
Subjt:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ

A0A6J5VXK4 DNA-directed RNA polymerase

1.1e-117

61.75

Show/hide

Query:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR
        L  I  IP+TQDASASAYQI+SYFLLDE+LA RTNLI S DGK QDVYSF+L++L+VFMK EL N+ +LS IVC    R LVKGIFMP IYGKT +S A 
Subjt:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR

Query:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR
        DL++ L  +IT KE   +A +CFKFW T+Y + ECL++LI HIGWIASA +SPV+Y +   TTVQDYM M+PIN+W +D LH+KRR+VTLRVSSSKRDRR
Subjt:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR

Query:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL
        KT ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA YS  LP  Y + IC MGPPL ILNEFI  N+          G    Y    VI  
Subjt:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL

Query:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ
        +IL   L   +P E  SKKM++TW  +I+ I+TSYENYTR +CGD    NP     AH +KWD F+
Subjt:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ

A0A6J5Y9W3 DNA-directed RNA polymerase

1.1e-117

61.75

Show/hide

Query:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR
        L  I  IP+TQDASASAYQI+SYFLLDE+LA RTNLI S DGK QDVYSF+L++L+VFMK EL N+ +LS IVC    R LVKGIFMP IYGKT +S A 
Subjt:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVAR

Query:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR
        DL++ L  +IT KE   +A +CFKFW T+Y + ECL++LI HIGWIASA +SPV+Y +   TTVQDYM M+PIN+W +D LH+KRR+VTLRVSSSKRDRR
Subjt:  DLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRR

Query:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL
        KT ISTFVNFIHQRDA+IAMKVVE ML+ GAPIYTVHDNFITTA YS  LP  Y + IC MGPPL ILNEFI  N+          G    Y    VI  
Subjt:  KTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNV---------GGNLREYSTSNVIPL

Query:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ
        +IL   L   +P E  SKKM++TW  +I+ I+TSYENYTR +CGD    NP     AH +KWD F+
Subjt:  DILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSICGD---SNP----EAHVKKWDNFQ

SwissProt top hits

e value

%identity

Alignment

P10581 Probable DNA-directed RNA polymerase

1.4e-40

29.89

Show/hide

Query:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIR--SSDGK-PQDVYSFML----------DELRVFMKEELQNDENLSNI---VCTHFNRDLVKG
        L+ +   P+ QDASASAYQI+SYFLLD      TNL++  ++DG+  +D+Y FM           +++ + +K    N+++  ++   + + F+R++VK 
Subjt:  LNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIR--SSDGK-PQDVYSFML----------DELRVFMKEELQNDENLSNI---VCTHFNRDLVKG

Query:  IFMPKIYGKTFISVARDLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWI---FDKL
        +FMP +YGKT  ++ +D+ + L      +   LI++    +W   +  M+ LM LI ++ W  +  + PV Y   Y  T+Q Y   + + + I     K 
Subjt:  IFMPKIYGKTFISVARDLREPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWI---FDKL

Query:  HQKRRQVT---LRVSSSKRDRRKTAISTFVNFIHQRDAYIAMKVVEFM--LDHGA--PIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEF---
        ++K  + T   + +  +  D RK++ STF NFIHQ+DA+ A+++V+F+  L++ +  PIY VHDNFIT   Y+ +LP  Y ++I  MG PL I+N+F   
Subjt:  HQKRRQVT---LRVSSSKRDRRKTAISTFVNFIHQRDAYIAMKVVEFM--LDHGA--PIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEF---

Query:  ------IQKNVGGNLREYST--------------------------------SNVIPLDILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSI
              IQ     N   +S                                 S VIP D+L KC +  +   K  K  L  W +    I+  Y  YT  I
Subjt:  ------IQKNVGGNLREYST--------------------------------SNVIPLDILEKCLNEKIPSEKRSKKMLSTWNAKITDIVTSYENYTRSI

Query:  CGDSNPEAHVKKWDNFQRLIRQKSLNLSFLPYWSA
          D      V +W     L  + +L  +  P WS+
Subjt:  CGDSNPEAHVKKWDNFQRLIRQKSLNLSFLPYWSA

P33539 Probable DNA-directed RNA polymerase

4.4e-07

21.6

Show/hide

Query:  PITQDASASAYQIISYFLLDETLAKRTNLIRSS----DGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR
        PI  DAS S  Q I+   L++ LA   NL   S    +  PQD Y++ L+++R    ++L N + ++ +     NR ++K   M   Y  +   +   L 
Subjt:  PITQDASASAYQIISYFLLDETLAKRTNLIRSS----DGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR

Query:  EPLG-------HYITFKESILIA------------QIC-------------FKFWNTKYDSM-ECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVM
        E           Y+    S  I+            Q+C              +  +  ++SM +  ++L I I W+  +     Y  I +        V+
Subjt:  EPLG-------HYITFKESILIA------------QIC-------------FKFWNTKYDSM-ECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVM

Query:  EPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGM-----GPPL
            I             T+++ +   D   T  S   NFIH  DA     ++  +     P+YTVHD F +TA     L +    A   +     G  L
Subjt:  EPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTAISTFVNFIHQRDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGM-----GPPL

Query:  KILNEFIQKNVGGNLREYSTSNVIPLDILEKCLNEKIP-----SEKRSKKMLSTWN--AKITDIVTSYENYTRSI
        K+   F+   +       S  N+   + ++    E++      S       +ST     KI D+   Y+N  ++I
Subjt:  KILNEFIQKNVGGNLREYSTSNVIPLDILEKCLNEKIP-----SEKRSKKMLSTWN--AKITDIVTSYENYTRSI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGACTTCTTCTTATTTTTTGAATTCCATTATGAACATACCTATTACCCAAGATGCCTCAGCGAGTGCATATCAGATCATCAGTTACTTTTTGTTGGATGAAACCCT
GGCTAAGAGAACGAATCTCATTCGTTCTTCGGATGGCAAACCCCAAGATGTTTATTCTTTCATGCTTGATGAGCTCAGGGTCTTCATGAAAGAAGAACTTCAGAATGATG
AGAATCTCTCAAATATTGTTTGTACACACTTCAATCGTGATCTCGTCAAAGGTATCTTTATGCCTAAGATCTATGGCAAAACTTTCATTAGTGTAGCCCGCGATCTAAGA
GAACCTCTCGGTCATTACATCACTTTTAAAGAAAGCATCTTAATCGCTCAAATCTGCTTTAAGTTCTGGAATACGAAATATGATAGCATGGAATGCTTGATGCAGTTGAT
CATCCATATAGGATGGATTGCGTCAGCTAGTAATAGTCCTGTTTATTATGGTATCTCTTATTTGACTACGGTACAGGATTATATGGTAATGGAACCCATCAATATATGGA
TTTTTGATAAACTCCATCAGAAGAGGCGTCAGGTCACTCTCAGAGTATCTTCTTCTAAGAGAGATCGTAGGAAGACAGCAATCTCTACCTTCGTCAACTTCATCCATCAG
AGGGATGCCTATATAGCAATGAAAGTCGTTGAATTTATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAACAGCTGCATATAGCGATTTGCT
TCCTCAATTTTATAGCGAAGCCATTTGCGGAATGGGTCCTCCACTGAAAATTCTCAACGAGTTCATCCAGAAGAATGTTGGTGGAAACCTCAGGGAGTACTCTACCAGTA
ATGTCATCCCATTAGATATACTTGAAAAATGCTTAAATGAGAAAATACCATCGGAAAAGAGAAGCAAGAAAATGCTTTCTACTTGGAATGCAAAAATCACAGATATCGTG
ACCTCTTACGAGAACTATACTCGTTCTATATGCGGTGATTCTAATCCGGAAGCTCATGTGAAAAAGTGGGATAACTTCCAGCGCCTGATTCGGCAAAAATCCTTGAATTT
GAGTTTCCTCCCGTATTGGTCTGCTCTACTGCAGCTTGTATCATTGCCTCAATCTCCATCTTTCCGAGAGGCTTCTCCATGGGGACCACTGAGCGATCATAGTATAACTC
TTCCATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLTSSYFLNSIMNIPITQDASASAYQIISYFLLDETLAKRTNLIRSSDGKPQDVYSFMLDELRVFMKEELQNDENLSNIVCTHFNRDLVKGIFMPKIYGKTFISVARDLR
EPLGHYITFKESILIAQICFKFWNTKYDSMECLMQLIIHIGWIASASNSPVYYGISYLTTVQDYMVMEPINIWIFDKLHQKRRQVTLRVSSSKRDRRKTAISTFVNFIHQ
RDAYIAMKVVEFMLDHGAPIYTVHDNFITTAAYSDLLPQFYSEAICGMGPPLKILNEFIQKNVGGNLREYSTSNVIPLDILEKCLNEKIPSEKRSKKMLSTWNAKITDIV
TSYENYTRSICGDSNPEAHVKKWDNFQRLIRQKSLNLSFLPYWSALLQLVSLPQSPSFREASPWGPLSDHSITLP

Lag0001011 (gene) of Sponge gourd (AG-4) v1 genome