CuGenDBv2

Gene ID	Lag0001018
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Photosystem II D2 protein
Genome location	chr4:21742889..21745280
RNA-Seq Expression	Lag0001018
Synteny	Lag0001018
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0009507 - chloroplast (cellular component) GO:0034357 - photosynthetic membrane (cellular component) GO:0042170 - plastid membrane (cellular component) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AFY03537.1 psbD protein, partial [Lagenaria siceraria]

7.0e-103

76.25

Show/hide

Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

QIT04128.1 photosystem II protein D2 [Sechium edule]

7.0e-103

76.25

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

YP_004841778.1 photosystem II protein D2 [Cucumis melo subsp. melo]

7.0e-103

76.25

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

YP_009415067.1 photosystem II protein D2 [Barclaya longifolia]

4.1e-103

80.58

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT--------------------------------------GGLWTFVALHG
        MTIA+G FTK+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFT                                      GGLWTFVALHG
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT--------------------------------------GGLWTFVALHG

Query:  AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV
        AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV
Subjt:  AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV

Query:  ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

YP_009485132.1 PsbD [Barclaya kunstleri]

7.0e-103

80.17

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT--------------------------------------GGLWTFVALHG
        MTIA+G+FTK+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFT                                      GGLW FVALHG
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT--------------------------------------GGLWTFVALHG

Query:  AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV
        AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV
Subjt:  AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV

Query:  ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1C1 Photosystem II D2 protein

3.4e-103

76.25

Show/hide

Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

A0A218KG45 Photosystem II D2 protein

3.4e-103

76.25

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

A0A220F168 Photosystem II D2 protein

2.0e-103

80.58

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT--------------------------------------GGLWTFVALHG
        MTIA+G FTK+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFT                                      GGLWTFVALHG
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT--------------------------------------GGLWTFVALHG

Query:  AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV
        AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV
Subjt:  AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV

Query:  ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  ENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

A0A249RZK8 Photosystem II D2 protein

3.4e-103

76.25

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

G3ETY0 Photosystem II D2 protein

3.4e-103

76.25

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

SwissProt top hits

e value

%identity

Alignment

P69685 Photosystem II D2 protein

2.0e-105

75.86

Show/hide

Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIA+GKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

Q2MIA5 Photosystem II D2 protein

1.2e-105

75.86

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIA+GKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

Q2MIJ2 Photosystem II D2 protein

1.2e-105

75.86

Show/hide

Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIA+GKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

Q2VEI1 Photosystem II D2 protein

1.2e-105

75.86

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIA+GKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

Q4VZN8 Photosystem II D2 protein

9.2e-106

76.25

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Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

2.4e-24

32.97

Show/hide

Query:  AVGGW-FTGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
        +V  W + GG +  + LH   G+  +M R++EL+  + +RP+ A+A+S P+A   +VFLIYP+GQ  +      G++  F F++ FQ  HN  ++PFHM+
Subjt:  AVGGW-FTGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLARGDSSRNKVITDLLLDWTIV
        GVAGV G +L  A+HG+ V ++L  E  +  +    +   Q EETY++V A+ ++    +      + ++ +   L  W +V
Subjt:  GVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLARGDSSRNKVITDLLLDWTIV

ATCG00270.1 photosystem II reaction center protein D

3.0e-104

74.33

Show/hide

Query:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------
        MTIA+GKFTKDE DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFT                                                 
Subjt:  MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT-------------------------------------------------

Query:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
                GGLW FVALHGAF LIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM
Subjt:  --------GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMM

Query:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA
        GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW+  F +A
Subjt:  GVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACTATAGCCGTTGGTAAATTTACCAAAGACGAAAATGATTTATTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATT
GCTCTTTCCTTGTGCCTATTTTGCCGTAGGAGGTTGGTTTACAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAAT
TTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGT
TGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAGGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGG
TGTATTGGGGGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG
CCGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGGCAAGTCCGTTTCTTTTAGCGAGAGGAGATTCCTCACGTAACAAGGTAATAACCGATTTGCTGTTAGAT
TGGACCATTGTTCCTCCTTTTCTATATGTCCTATATGTAGGTGGGAAGTACACACCGAATGTTGCATTAAACCAATGTTTATCGAAGTTAACGTGTACGCGAATGCTCGC
TTCCTTACTTCAGTCCGAGGATCCTCGATATGTTGATCCCCTATCAGCTCATGATATTATTTTTCACTTTGTTGGGATGTTGGACGGCGGTCGGGTCCACTTCGAGAATG
GCTTGGGGTACCAGTGCCCAAAAATCAAAAGCACCTACTACAAGGGACATGGTATTTCTCGAAAGATCCTTCTAGCTCGCGCTGCACTAGGTAGACCCGCCAGAATACTT
CCCGATTTGAAGGGGCCGCTTTGGCTGACCCGAGATTCTCTTTCGCTTATCGGCCGGCCGGCTTTCATTGTTGCAACCTTCGCATTTCCTGCTGAGATCCCAAGTCTCCA
AGTGGGCCCTCTTGGCCACCCGCGACCTTGGCTTTTTAGAGAATCCCGCTCCTGTGTCGTGGGACTTGTAGCTCGGCAGTCCACCGGGTGGGCGCAAGATGTACCTTGTG
TGGGGGGGGGCGGCGGTCCCCTGGACATAGTCCTTTCAGGCAGTGGCCGTTTAGTCCATGGTCCATTAGATGGTCGGTGCAAGGCCAGAAATTTGAACACATTGATTCCG
CTCGTTCCCGTCCTTCGCTTCAGGGCCTGTCCCTCGGTGTGGTCAGTACTCCATACTGTCGGGCAGCGAAGCTTACACTTGTTCACTAATTATGACGGTTCGCCAGGGCC
TCTTTCCTCCTCCCTTTTCTGCTCACTCGTAGGGTCCGGACCCCCACAAAGGGGGAGGGAGTCGACTGAACATCTCAGCCATTGGCGGGAATTTCGCCCGCATCCGATCC
CCAATTCTTGTTCACCCCCGATGATCGTGTTGGGTGAATTGTGA

mRNA sequence

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Protein sequence

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MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSG
WFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWASPFLLARGDSSRNKVITDLLLD
WTIVPPFLYVLYVGGKYTPNVALNQCLSKLTCTRMLASLLQSEDPRYVDPLSAHDIIFHFVGMLDGGRVHFENGLGYQCPKIKSTYYKGHGISRKILLARAALGRPARIL
PDLKGPLWLTRDSLSLIGRPAFIVATFAFPAEIPSLQVGPLGHPRPWLFRESRSCVVGLVARQSTGWAQDVPCVGGGGGPLDIVLSGSGRLVHGPLDGRCKARNLNTLIP
LVPVLRFRACPSVWSVLHTVGQRSLHLFTNYDGSPGPLSSSLFCSLVGSGPPQRGRESTEHLSHWREFRPHPIPNSCSPPMIVLGEL

Lag0001018 (gene) of Sponge gourd (AG-4) v1 genome