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Lag0001031 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001031
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:22339617..22340033
RNA-Seq ExpressionLag0001031
SyntenyLag0001031
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-2254.7Show/hide
Query:  FIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQ
        + +S     E + P++MSVM+TD  TSE RM  +EKK++M +K+VEE+D EIASL+N +ESRD  E S    +K  DKGK + Q+ Q Q+S SIASLSVQ
Subjt:  FIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQ

Query:  QLHDMIMNSIRAQYGGP
        QL +MI NSI+ QYGGP
Subjt:  QLHDMIMNSIRAQYGGP

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-2355.04Show/hide
Query:  IATTENLMLGKFIYSSQQPNETS-SPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QS
        I   EN  + +    S++ NE +  P++MSVM+TD  TSE+RM  +EKK++M +K VEE+D EIASL+N +ESRD +E S T  IK  +KGK I Q+ Q 
Subjt:  IATTENLMLGKFIYSSQQPNETS-SPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QS

Query:  QHSASIASLSVQQLHDMIMNSIRAQYGGP
        Q+S SIASLSVQQLH+MI NSI+ QYGGP
Subjt:  QHSASIASLSVQQLHDMIMNSIRAQYGGP

TYK09751.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-2249.65Show/hide
Query:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D
        +L+ + ES ++ I   EN +   F Y+S +  + + PDVM VMM D  T+E  M  +EKKI+  +K +EE D EI +LR QM +R+  E SQTP +K  D
Subjt:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D

Query:  KGKIIAQ--DQSQHSASIASLSVQQLHDMIMNSIRAQYGGP
        KGK + Q     Q S SIASLSVQ+L DMI NSIRAQYGGP
Subjt:  KGKIIAQ--DQSQHSASIASLSVQQLHDMIMNSIRAQYGGP

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]7.9e-2247.18Show/hide
Query:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D
        +L+ + ES +  I   EN +   +  +S +  + + PDVMSVMM D    E  M  +E+KI++ +K+V+E+D EIA+L+ QM++R+  E SQTP +K  D
Subjt:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D

Query:  KGKIIAQDQ--SQHSASIASLSVQQLHDMIMNSIRAQYGGPT
        KGK + Q+    Q S S+ASLSVQQL DMI NSIRAQYGGP+
Subjt:  KGKIIAQDQ--SQHSASIASLSVQQLHDMIMNSIRAQYGGPT

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]7.9e-2247.18Show/hide
Query:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D
        +L+ + ES +  I   EN +   +  +S +  + + PDVMSVMM D    E  M  +E+KI++ +K+V+E+D EIA+L+ QM++R+  E SQTP +K  D
Subjt:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D

Query:  KGKIIAQDQ--SQHSASIASLSVQQLHDMIMNSIRAQYGGPT
        KGK + Q+    Q S S+ASLSVQQL DMI NSIRAQYGGP+
Subjt:  KGKIIAQDQ--SQHSASIASLSVQQLHDMIMNSIRAQYGGPT

TrEMBL top hitse value%identityAlignment
A0A5A7U5H1 Ty3-gypsy retrotransposon protein1.1e-2157.89Show/hide
Query:  SSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQQLH
        S +   E   P++MSVM+TD  TSE+RM  +EKK++M +K VEEKD EIA L+N +ESRD  E S T  IK  +KGK I Q+ Q Q+S SIASLSVQQL 
Subjt:  SSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQQLH

Query:  DMIMNSIRAQYGGP
        +MI NSI+ QYGGP
Subjt:  DMIMNSIRAQYGGP

A0A5A7U9H0 Ty3-gypsy retrotransposon protein2.0e-2355.04Show/hide
Query:  IATTENLMLGKFIYSSQQPNETS-SPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QS
        I   EN  + +    S++ NE +  P++MSVM+TD  TSE+RM  +EKK++M +K VEE+D EIASL+N +ESRD +E S T  IK  +KGK I Q+ Q 
Subjt:  IATTENLMLGKFIYSSQQPNETS-SPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QS

Query:  QHSASIASLSVQQLHDMIMNSIRAQYGGP
        Q+S SIASLSVQQLH+MI NSI+ QYGGP
Subjt:  QHSASIASLSVQQLHDMIMNSIRAQYGGP

A0A5D3C4W1 Ty3-gypsy retrotransposon protein1.7e-2254.7Show/hide
Query:  FIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQ
        + +S     E + P++MSVM+TD  TSE RM  +EKK++M +K+VEE+D EIASL+N +ESRD  E S    +K  DKGK + Q+ Q Q+S SIASLSVQ
Subjt:  FIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQ

Query:  QLHDMIMNSIRAQYGGP
        QL +MI NSI+ QYGGP
Subjt:  QLHDMIMNSIRAQYGGP

A0A5D3CD35 Ty3-gypsy retrotransposon protein3.8e-2249.65Show/hide
Query:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D
        +L+ + ES ++ I   EN +   F Y+S +  + + PDVM VMM D  T+E  M  +EKKI+  +K +EE D EI +LR QM +R+  E SQTP +K  D
Subjt:  MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--D

Query:  KGKIIAQ--DQSQHSASIASLSVQQLHDMIMNSIRAQYGGP
        KGK + Q     Q S SIASLSVQ+L DMI NSIRAQYGGP
Subjt:  KGKIIAQ--DQSQHSASIASLSVQQLHDMIMNSIRAQYGGP

A0A5D3CD55 Ty3-gypsy retrotransposon protein6.5e-2256.41Show/hide
Query:  YSSQQPN--ETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQ
        YSS QP+  E   P++MSVM+T+  TSE RMT +EKK++M +K+VEE+D EIA L+N +ES D  E S    +K  DKGK + Q+ QSQ+S SI SLSVQ
Subjt:  YSSQQPN--ETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQ

Query:  QLHDMIMNSIRAQYGGP
        QL +MI NSI+ QYGGP
Subjt:  QLHDMIMNSIRAQYGGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGACACATGACAGAATCTGATCAACTTGAAATCGCCACTACAGAAAATTTGATGCTCGGCAAATTCATCTATTCTTCTCAGCAACCAAACGAAACCTCCAGTCC
TGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGACTGGAGTTGAGAAGAAAATCAGCATGTTTCTGAAGATGGTCGAAGAGAAAGACCAAG
AAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGTTGAATTGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAAATTATTGCACAAGATCAGTCACAACAT
TCCGCTTCTATTGCTTCACTGTCCGTCCAGCAGCTCCATGATATGATCATGAATTCCATCAGAGCTCAATATGGTGGACCGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGACACATGACAGAATCTGATCAACTTGAAATCGCCACTACAGAAAATTTGATGCTCGGCAAATTCATCTATTCTTCTCAGCAACCAAACGAAACCTCCAGTCC
TGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGACTGGAGTTGAGAAGAAAATCAGCATGTTTCTGAAGATGGTCGAAGAGAAAGACCAAG
AAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGTTGAATTGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAAATTATTGCACAAGATCAGTCACAACAT
TCCGCTTCTATTGCTTCACTGTCCGTCCAGCAGCTCCATGATATGATCATGAATTCCATCAGAGCTCAATATGGTGGACCGACTTAG
Protein sequenceShow/hide protein sequence
MLRHMTESDQLEIATTENLMLGKFIYSSQQPNETSSPDVMSVMMTDAGTSEERMTGVEKKISMFLKMVEEKDQEIASLRNQMESRDVVELSQTPAIKDKGKIIAQDQSQH
SASIASLSVQQLHDMIMNSIRAQYGGPT