CuGenDBv2

Gene ID	Lag0001034
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	la-related protein 6B
Genome location	chr4:22495821..22496396
RNA-Seq Expression	Lag0001034
Synteny	Lag0001034
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0005634 - nucleus (cellular component) GO:1990904 - ribonucleoprotein complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588510.1 La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-71

80.86

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Query:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGS
        MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G  PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGS
Subjt:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGS

Query:  PFHVPIQT--------PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKL
        PFHVPIQ+        PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD  VQQPQKP  ESDYGAPSRTKLTEEVSQKL
Subjt:  PFHVPIQT--------PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKL

Query:  LNQVAFAFS
        LNQV + FS
Subjt:  LNQVAFAFS

XP_022157471.1 la-related protein 6B [Momordica charantia]

5.9e-76

88.77

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Query:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP
        SSSS P SS  SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQP QSAPGPPPPP KQSPRILIPSPPPPP ++HVYPP PPGSPFHVPIQ+PVPVP
Subjt:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP

Query:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS
        T VVSIQN HHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPD  VQQPQKPQ ESDY APSR+KLTEEVSQKLLNQV + FS
Subjt:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS

XP_022928061.1 la-related protein 6B-like [Cucurbita moschata]

3.0e-72

83.25

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Query:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP     P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G  PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD  VQQPQKP  ESDYGAPSRTKLTEEVSQKLLNQV +
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF

Query:  AFS
         FS
Subjt:  AFS

XP_022969525.1 la-related protein 6B-like [Cucurbita maxima]

2.3e-72

82.76

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Query:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPPQS+ G  PPPPP KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD  VQQPQKP  ESDYGAPSRTKLT EVSQKLLNQV +
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF

Query:  AFS
         FS
Subjt:  AFS

XP_038888029.1 la-related protein 6B [Benincasa hispida]

5.0e-75

89.01

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Query:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG-PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPV
        MAQHS      SSSQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DLQPPQSAPG PPPPPPKQSPRILIPSPPPPPA+MHVY PPPPGSPFHVPIQTPV
Subjt:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG-PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPV

Query:  PVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTA-VQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS
        PVPTHVVSIQN HHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFH+PDTA VQQPQKP  ESDY APSR+KLTEEVSQKLLNQV + FS
Subjt:  PVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTA-VQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DY71 la-related protein 6B

2.9e-76

88.77

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Query:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP
        SSSS P SS  SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQP QSAPGPPPPP KQSPRILIPSPPPPP ++HVYPP PPGSPFHVPIQ+PVPVP
Subjt:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP

Query:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS
        T VVSIQN HHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPD  VQQPQKPQ ESDY APSR+KLTEEVSQKLLNQV + FS
Subjt:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS

A0A6J1EJ80 la-related protein 6B-like

1.5e-72

83.25

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Query:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP     P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G  PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD  VQQPQKP  ESDYGAPSRTKLTEEVSQKLLNQV +
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF

Query:  AFS
         FS
Subjt:  AFS

A0A6J1GLH8 la-related protein 6B-like

1.8e-70

84.82

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Query:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDL-QPPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP
        MAQHSSSS   S SQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DL QPP SA GP PPPPKQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQ+P
Subjt:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDL-QPPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP

Query:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS
        VPVPTHVVS+QN HHYH HHRHHHHSHHVPVLYHPHNPQYYADNGGFH+PDT VQQ QKPQ E+DY APSR+KL E+VS KLLNQV + FS
Subjt:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS

A0A6J1I059 la-related protein 6B-like

1.1e-72

82.76

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Query:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPPQS+ G  PPPPP KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD  VQQPQKP  ESDYGAPSRTKLT EVSQKLLNQV +
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAF

Query:  AFS
         FS
Subjt:  AFS

A0A6J1I3E0 la-related protein 6B-like

4.7e-71

85.34

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Query:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQ-PPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP
        MAQHSSSS   S SQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DLQ PP SA GP PPPPKQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQ+P
Subjt:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQ-PPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP

Query:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS
        VPVPTHVVS+QN HHYH HHRHHHHSHHVPVLYHPHNPQYYADNGGFH+PDT VQQ QKPQ E+DY APSR+KLTE+VS KLLNQV + FS
Subjt:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFS

SwissProt top hits

e value

%identity

Alignment

O80567 La-related protein 6B

1.3e-14

39.71

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Query:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT
        HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  
Subjt:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT

Query:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTAVQQ-------------PQKPQPESDYGAPSRTKLTEEVSQKLLNQVA
        H+V +QNHH +H  H+HHHH+ H     VPV  H    Q     GG  EPD   ++              Q  +  +     S+T L E+  QK++NQV 
Subjt:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTAVQQ-------------PQKPQPESDYGAPSRTKLTEEVSQKLLNQVA

Query:  FAFS
        + FS
Subjt:  FAFS

Arabidopsis top hits

e value

%identity

Alignment

AT2G43970.1 RNA-binding protein

9.5e-16

39.71

Show/hide

Query:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT
        HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  
Subjt:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT

Query:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTAVQQ-------------PQKPQPESDYGAPSRTKLTEEVSQKLLNQVA
        H+V +QNHH +H  H+HHHH+ H     VPV  H    Q     GG  EPD   ++              Q  +  +     S+T L E+  QK++NQV 
Subjt:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTAVQQ-------------PQKPQPESDYGAPSRTKLTEEVSQKLLNQVA

Query:  FAFS
        + FS
Subjt:  FAFS

AT2G43970.2 RNA-binding protein

9.5e-16

39.71

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Query:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT
        HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  
Subjt:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT

Query:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTAVQQ-------------PQKPQPESDYGAPSRTKLTEEVSQKLLNQVA
        H+V +QNHH +H  H+HHHH+ H     VPV  H    Q     GG  EPD   ++              Q  +  +     S+T L E+  QK++NQV 
Subjt:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTAVQQ-------------PQKPQPESDYGAPSRTKLTEEVSQKLLNQVA

Query:  FAFS
        + FS
Subjt:  FAFS

Sequences

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CDS sequence

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ATGGCACAACATTCTTCCTCTTCGCCTCCCGATTCCTCTTCCCAATCCGATCCATCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCCCAGGCTCCTGAGTTCGT
CCCCACTCGCCCCTCCCCTCGTCCCGATCTACAACCGCCGCAGTCCGCCCCCGGCCCCCCGCCTCCTCCGCCCAAGCAATCGCCCCGGATTCTCATCCCTTCTCCTCCTC
CGCCGCCAGCCATCATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCTATTCAGAAT
CATCATCACTATCACCCTCATCACCGCCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTTCATGA
GCCCGACACCGCTGTGCAGCAACCTCAGAAGCCACAGCCTGAGTCCGACTATGGTGCTCCATCTAGGACTAAACTCACTGAGGAAGTCTCCCAAAAGCTTTTGAATCAGG
TTGCCTTTGCCTTTTCTTTTCACTAG

mRNA sequence

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Protein sequence

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MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQN
HHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTAVQQPQKPQPESDYGAPSRTKLTEEVSQKLLNQVAFAFSFH

Lag0001034 (gene) of Sponge gourd (AG-4) v1 genome