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Lag0001039 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001039
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:22524771..22525613
RNA-Seq ExpressionLag0001039
SyntenyLag0001039
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048521.1 uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa]1.4e-1044Show/hide
Query:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG
        R+ +DP L  G I+ Q  E  +YD  S   A + +F  PDG W+WP VS+EL+ L   VQ     L  R +W GFLV    SLS VHGK+  LG + F G
Subjt:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]4.0e-1045Show/hide
Query:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ---GGLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG
        R+ +DP L  G I+ Q  E+ +YD  S   A + DF  PDG W WP VSLEL+ L   VQ     L     W GFLV    SL  VHGKL  LG + F G
Subjt:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ---GGLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG

TYK28312.1 uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa]1.4e-1044Show/hide
Query:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG
        R+ +DP L  G I+ Q  E  +YD  S   A + +F  PDG W+WP VS+EL+ L   VQ     L  R +W GFLV    SLS VHGK+  LG + F G
Subjt:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]1.7e-0845.71Show/hide
Query:  DPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG-----GLLERIVWYGFLVALEGSLSLVHGKLSSLGP-------
        DP LS G I P+  ++ IYDV S   A VVDF  PDGSWRWP VS++LL LLP V       G  +R VW   +  L  S+S V G L    P       
Subjt:  DPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG-----GLLERIVWYGFLVALEGSLSLVHGKLSSLGP-------

Query:  LWFLG
        LWF G
Subjt:  LWFLG

XP_038895844.1 uncharacterized protein LOC120084011 [Benincasa hispida]4.9e-0826.92Show/hide
Query:  VGLAYGRLTYRDCKPLLEWITAQISSWSTR----------------------GGSDLAW-------------------WSQGCLVRALVATYDEIGIVMG
        +G++ GRL   DC PL++ ITA I SW+ R                       G+ +AW                   W+Q  +++ L     + G  + 
Subjt:  VGLAYGRLTYRDCKPLLEWITAQISSWSTR----------------------GGSDLAW-------------------WSQGCLVRALVATYDEIGIVMG

Query:  VGWRFISCVGGWSLWTMR-----LHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ
        V W   + + G SLW +R     +  DP L  G ++  +    I+D  S L A + +F   +G WRWP+VS +LL +   +Q
Subjt:  VGWRFISCVGGWSLWTMR-----LHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ

TrEMBL top hitse value%identityAlignment
A0A5A7U4M4 Reverse transcriptase domain-containing protein6.6e-1144Show/hide
Query:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG
        R+ +DP L  G I+ Q  E  +YD  S   A + +F  PDG W+WP VS+EL+ L   VQ     L  R +W GFLV    SLS VHGK+  LG + F G
Subjt:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG

A0A5A7UVV0 Uncharacterized protein1.9e-1045Show/hide
Query:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ---GGLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG
        R+ +DP L  G I+ Q  E+ +YD  S   A + DF  PDG W WP VSLEL+ L   VQ     L     W GFLV    SL  VHGKL  LG + F G
Subjt:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ---GGLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG

A0A5D3DT54 Zf-RVT domain-containing protein6.4e-0646.77Show/hide
Query:  TMRLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ
        + R+ +DP L EG I+ Q  E+ +YD  S   A + DF  PDG W WP VSLEL+ L   VQ
Subjt:  TMRLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQ

A0A5D3DXQ8 Reverse transcriptase domain-containing protein6.6e-1144Show/hide
Query:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG
        R+ +DP L  G I+ Q  E  +YD  S   A + +F  PDG W+WP VS+EL+ L   VQ     L  R +W GFLV    SLS VHGK+  LG + F G
Subjt:  RLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG---GLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLG

A0A6J1E271 uncharacterized protein LOC1110253248.1e-0945.71Show/hide
Query:  DPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG-----GLLERIVWYGFLVALEGSLSLVHGKLSSLGP-------
        DP LS G I P+  ++ IYDV S   A VVDF  PDGSWRWP VS++LL LLP V       G  +R VW   +  L  S+S V G L    P       
Subjt:  DPRLSEGLIIPQFSEKAIYDVVSLLHAPVVDFFFPDGSWRWPSVSLELLLLLPLVQG-----GLLERIVWYGFLVALEGSLSLVHGKLSSLGP-------

Query:  LWFLG
        LWF G
Subjt:  LWFLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGATTAGCTTATGGTCGGTTAACGTATAGGGACTGTAAGCCTCTTCTGGAGTGGATTACTGCTCAGATTAGCTCATGGTCGACTCGAGGGGGATCCGACCTTGC
ATGGTGGAGCCAAGGTTGCCTTGTCAGAGCTCTTGTGGCTACTTATGATGAGATCGGGATCGTTATGGGTGTCGGGTGGAGGTTTATATCTTGTGTAGGTGGGTGGTCCT
TGTGGACTATGCGCCTCCATGTGGATCCTCGGTTGTCGGAAGGTCTTATTATTCCTCAGTTTTCTGAGAAGGCTATTTATGATGTCGTTAGTTTGTTGCATGCTCCTGTG
GTTGATTTCTTTTTTCCGGATGGGTCTTGGAGGTGGCCAAGTGTTTCGCTTGAGCTGTTGCTTCTTCTGCCTTTGGTGCAAGGTGGGTTGCTAGAGAGGATAGTGTGGTA
TGGCTTCTTAGTAGCTCTAGAGGGTTCTCTGTCTCTAGTGCATGGAAAGCTATCCAGCCTCGGTCCCCTGTGGTTCCTTGGTTTCGCCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGATTAGCTTATGGTCGGTTAACGTATAGGGACTGTAAGCCTCTTCTGGAGTGGATTACTGCTCAGATTAGCTCATGGTCGACTCGAGGGGGATCCGACCTTGC
ATGGTGGAGCCAAGGTTGCCTTGTCAGAGCTCTTGTGGCTACTTATGATGAGATCGGGATCGTTATGGGTGTCGGGTGGAGGTTTATATCTTGTGTAGGTGGGTGGTCCT
TGTGGACTATGCGCCTCCATGTGGATCCTCGGTTGTCGGAAGGTCTTATTATTCCTCAGTTTTCTGAGAAGGCTATTTATGATGTCGTTAGTTTGTTGCATGCTCCTGTG
GTTGATTTCTTTTTTCCGGATGGGTCTTGGAGGTGGCCAAGTGTTTCGCTTGAGCTGTTGCTTCTTCTGCCTTTGGTGCAAGGTGGGTTGCTAGAGAGGATAGTGTGGTA
TGGCTTCTTAGTAGCTCTAGAGGGTTCTCTGTCTCTAGTGCATGGAAAGCTATCCAGCCTCGGTCCCCTGTGGTTCCTTGGTTTCGCCTCCTAA
Protein sequenceShow/hide protein sequence
MVGLAYGRLTYRDCKPLLEWITAQISSWSTRGGSDLAWWSQGCLVRALVATYDEIGIVMGVGWRFISCVGGWSLWTMRLHVDPRLSEGLIIPQFSEKAIYDVVSLLHAPV
VDFFFPDGSWRWPSVSLELLLLLPLVQGGLLERIVWYGFLVALEGSLSLVHGKLSSLGPLWFLGFAS