CuGenDBv2

Gene ID	Lag0001048
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	GRF-type domain-containing protein
Genome location	chr4:22987496..22988729
RNA-Seq Expression	Lag0001048
Synteny	Lag0001048
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007650 - Zf-FLZ domain IPR010666 - Zinc finger, GRF-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8650737.1 hypothetical protein Csa_023406 [Cucumis sativus]

5.8e-32

76.53

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL
        +EEP IESS  GSC EG DHG VDAN QIC+S K VLKEEHD+YLCRDGKAFCSSQC S+EIF E K  K SKDDSESSA SSY  EDLFI+GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL

KAG6581903.1 FCS-Like Zinc finger 10, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-32

76.29

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL
        +EEP IESS  GS SEG D G VDAN QIC+S K VLKEEHD+YLCRDGKAFCSS+C S+EIFAEDK +K SKDDSESSA SSY EDLF++GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL

XP_022955977.1 uncharacterized protein LOC111457811 [Cucurbita moschata]

2.0e-32

76.29

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL
        +EEP IESS  GS SEG D G VDAN QIC+S K VLKEEHD+YLCRDGKAFCSS+C S+EIFAEDK +K SKDDSESSA SSY EDLF++GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL

XP_022979625.1 uncharacterized protein LOC111479299 [Cucurbita maxima]

7.6e-32

75.26

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL
        +EEP IESS  GSCSEG   G VDAN QIC+S K VLKEEHD+YLCRDGKAFCSS+C S+EIFAE K +K SKDDSESSA SSY EDLF++GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL

XP_031739147.1 FCS-Like Zinc finger 8 [Cucumis sativus]

5.8e-32

76.53

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL
        +EEP IESS  GSC EG DHG VDAN QIC+S K VLKEEHD+YLCRDGKAFCSSQC S+EIF E K  K SKDDSESSA SSY  EDLFI+GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBN9 FLZ-type domain-containing protein

2.8e-32

76.53

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL
        +EEP IESS  GSC EG DHG VDAN QIC+S K VLKEEHD+YLCRDGKAFCSSQC S+EIF E K  K SKDDSESSA SSY  EDLFI+GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL

A0A1S3BIG7 uncharacterized protein LOC103489929

4.8e-32

76.53

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL
        +EEP  ESSL GSC EG  HG VDAN QIC+S K VLKEEHD+YLCRDGKAFCSSQC SQEIF E K  K SKDDSESSA SSY  EDLFI+GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL

A0A5D3CBK9 Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2

4.8e-32

76.53

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL
        +EEP  ESSL GSC EG  HG VDAN QIC+S K VLKEEHD+YLCRDGKAFCSSQC SQEIF E K  K SKDDSESSA SSY  EDLFI+GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSY-LEDLFIIGLPFAL

A0A6J1GV36 uncharacterized protein LOC111457811

9.7e-33

76.29

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL
        +EEP IESS  GS SEG D G VDAN QIC+S K VLKEEHD+YLCRDGKAFCSS+C S+EIFAEDK +K SKDDSESSA SSY EDLF++GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL

A0A6J1ITT9 uncharacterized protein LOC111479299

3.7e-32

75.26

Show/hide

Query:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL
        +EEP IESS  GSCSEG   G VDAN QIC+S K VLKEEHD+YLCRDGKAFCSS+C S+EIFAE K +K SKDDSESSA SSY EDLF++GLPFAL
Subjt:  VEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G54930.1 GRF zinc finger / Zinc knuckle protein

4.2e-04

43.18

Show/hide

Query:  YCYCGL-RARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCD
        +C C       +TS T++NP RRFY CP        CG+F WCD
Subjt:  YCYCGL-RARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCD

AT3G42860.1 zinc knuckle (CCHC-type) family protein

8.2e-08

60.47

Show/hide

Query:  CYCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCD
        C CG+   LI TS T +NPGR+FY CP  + NG GCGFF WCD
Subjt:  CYCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCACGAGAAATGCCACAGAAACTTTCAAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCCTAGCTACTGTTACTGTGG
GTTAAGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTTATTGGT
GTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTAACAAACTAAGAGACGAAGTTGGTCGGTTGAAGAAGATTGCACAAAACTTGCGCCATTTGGAGTGGTTGTAT
CGTGTAATAATTGTAGTATTGGTTGAAGAACCCGCGATCGAATCATCTCTGTCGGGAAGTTGCTCAGAAGGTTTGGACCACGGAGCTGTGGATGCGAATTCACAAATCTG
TCACTCATTCAAGATAGTTTTGAAAGAAGAGCATGATGTTTATTTATGCAGGGATGGAAAAGCTTTTTGCAGTTCTCAGTGCATCTCTCAGGAGATTTTTGCAGAAGATA
AATTCGAGAAGGCTTCGAAAGATGATAGTGAAAGCTCTGCAACGTCGAGCTACCTTGAGGATCTGTTCATCATCGGTCTCCCTTTTGCTTTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSREMPQKLSKIAMDNFEESIRGDNSETKNPSYCYCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPEVSEHSKEVINKLRDEVGRLKKIAQNLRHLEWLY
RVIIVVLVEEPAIESSLSGSCSEGLDHGAVDANSQICHSFKIVLKEEHDVYLCRDGKAFCSSQCISQEIFAEDKFEKASKDDSESSATSSYLEDLFIIGLPFAL

Lag0001048 (gene) of Sponge gourd (AG-4) v1 genome