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Lag0001049 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001049
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr4:22997698..22999273
RNA-Seq ExpressionLag0001049
SyntenyLag0001049
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]2.2e-3381.82Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEESIY+ Q EGFIAQDQEQKVCKL++SIYGLKQASRSWN+RFDTAIKS+GFEQNVDEPCVYK+I+N+ VAFL+L  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
KAA0045356.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-3180.68Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEESIY+ Q EGFI + QEQKVCKL++SIYGLKQASRSWN+RFDT IKS+GFEQNVDEPCVYKRIIN+ VAFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
KAA0067084.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3179.55Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEE+IY+ Q EGFI   QEQKVCKL RSIYGLKQASRSWN+RFDTAIKS+GF+Q VDEPCVYKRIINN +AFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
TYK09500.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-3175Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEESIY++Q EGFI + QEQK+CK ++SIYGLKQASRSWN+RFDTAIKS+GFEQNVD+PCVYK+++N+ VAFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
TYK26319.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3178.41Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEE+IY+ Q EGFI   QEQK+CKL RSIYGLKQASRSWN+RFDTAIKS+GF+Q VDEPCVYKRIINN +AFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
TrEMBL top hitse value%identityAlignment
A0A5A7TTA2 Gag/pol protein7.6e-3280.68Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEESIY+ Q EGFI + QEQKVCKL++SIYGLKQASRSWN+RFDT IKS+GFEQNVDEPCVYKRIIN+ VAFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
A0A5A7VI97 Gag/pol protein3.8e-3179.55Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEE+IY+ Q EGFI   QEQKVCKL RSIYGLKQASRSWN+RFDTAIKS+GF+Q VDEPCVYKRIINN +AFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
A0A5D3CDT9 Gag/pol protein2.9e-3175Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEESIY++Q EGFI + QEQK+CK ++SIYGLKQASRSWN+RFDTAIKS+GFEQNVD+PCVYK+++N+ VAFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
A0A5D3DS88 Gag/pol protein3.8e-3178.41Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEE+IY+ Q EGFI   QEQK+CKL RSIYGLKQASRSWN+RFDTAIKS+GF+Q VDEPCVYKRIINN +AFLVL  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
E2GK51 Gag/pol protein (Fragment)1.1e-3381.82Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        TAFLNGNLEESIY+ Q EGFIAQDQEQKVCKL++SIYGLKQASRSWN+RFDTAIKS+GFEQNVDEPCVYK+I+N+ VAFL+L  +D+L
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
SwissProt top hitse value%identityAlignment
P04146 Copia protein4.3e-0838.38Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVY---KRIINN------FVAFLVLVANDMLTM
        TAFLNG L+E IY+   +G         VCKL ++IYGLKQA+R W   F+ A+K   F  +  + C+Y   K  IN       +V  +V+   DM  M
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVY---KRIINN------FVAFLVLVANDMLTM
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-1746.88Show/hide
Query:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVY-KRIINNFVAFLVLVANDMLTMPQAHG
        TAFL+G+LEE IY+ Q EGF    ++  VCKL +S+YGLKQA R W M+FD+ +KS  + +   +PCVY KR   N    L+L  +DML + +  G
Subjt:  TAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVY-KRIINNFVAFLVLVANDMLTMPQAHG
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.6e-1033.33Show/hide
Query:  AFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        AFL G L + +Y+SQ  GFI +D+   VCKL++++YGLKQA R+W +     + + GF  +V +  ++       + ++++  +D+L
Subjt:  AFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-1030.69Show/hide
Query:  AFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDMLTMPQAHGSSQVIV
        AFL G L + +Y+SQ  GF+ +D+   VC+L+++IYGLKQA R+W +   T + + GF  ++ +  ++       + ++++  +D+L      G+  V++
Subjt:  AFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDMLTMPQAHGSSQVIV

Query:  K
        K
Subjt:  K
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 87.3e-1136.26Show/hide
Query:  AFLNGNLEESIYLSQLEGFIAQDQE----QKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML
        AFLNG+L+E IY+    G+ A+  +      VC LK+SIYGLKQASR W ++F   +  FGF Q+  +   + +I       +++  +D++
Subjt:  AFLNGNLEESIYLSQLEGFIAQDQE----QKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDML

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAAACTCTCCAAAACTCAAACAGAGCAAAGTTTGGACCATGTGCTGCCAAACGACCTGAAGACCTTTCATTGGGTCGAACTTTGTGTTCCAAACTCTACAAAAC
TCAAACGGAGGAAAGTTTGGACCATGTGTCGTCCAAACCACCTGAAGACCTCTCATTGGGACGAGCTATTGATTCCAAACTCTTTAAAACTCAAATGGAGCAAAGTTTGG
ACCATGTGTCATCCAAACTAGCTGAAGACCTCTCATTGGGCCAAACTTTATGTTCCAAACTCTCCAAAACTCAAACAGAGCAAAGTTTGGACAATGTGCTGCCAAACCAC
CTGAAGACCTCTCATTGGGCTGAACTTTGTGTTCCAAACTCTCCAAAACTCAAAGTTTCGACTAAACCAACTGCCTTTCTGAATGGCAATCTTGAAGAAAGTATCTACCT
GTCTCAGCTAGAGGGGTTCATTGCTCAGGATCAAGAGCAAAAAGTTTGCAAGCTTAAACGATCCATTTATGGGTTAAAACAAGCATCTAGATCCTGGAACATGAGATTTG
ATACTGCAATCAAATCTTTTGGCTTTGAACAAAACGTTGATGAGCCTTGTGTTTACAAAAGGATCATCAATAACTTCGTAGCTTTCTTAGTACTTGTTGCGAACGATATG
CTAACAATGCCACAAGCGCATGGGTCGTCACAAGTAATAGTAAAACGGAAATATTCCGAGTATCGAATCCACAGGCAGGCGAAGCGAAATTTAAGCAAAGAAAAAATTCC
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAAACTCTCCAAAACTCAAACAGAGCAAAGTTTGGACCATGTGCTGCCAAACGACCTGAAGACCTTTCATTGGGTCGAACTTTGTGTTCCAAACTCTACAAAAC
TCAAACGGAGGAAAGTTTGGACCATGTGTCGTCCAAACCACCTGAAGACCTCTCATTGGGACGAGCTATTGATTCCAAACTCTTTAAAACTCAAATGGAGCAAAGTTTGG
ACCATGTGTCATCCAAACTAGCTGAAGACCTCTCATTGGGCCAAACTTTATGTTCCAAACTCTCCAAAACTCAAACAGAGCAAAGTTTGGACAATGTGCTGCCAAACCAC
CTGAAGACCTCTCATTGGGCTGAACTTTGTGTTCCAAACTCTCCAAAACTCAAAGTTTCGACTAAACCAACTGCCTTTCTGAATGGCAATCTTGAAGAAAGTATCTACCT
GTCTCAGCTAGAGGGGTTCATTGCTCAGGATCAAGAGCAAAAAGTTTGCAAGCTTAAACGATCCATTTATGGGTTAAAACAAGCATCTAGATCCTGGAACATGAGATTTG
ATACTGCAATCAAATCTTTTGGCTTTGAACAAAACGTTGATGAGCCTTGTGTTTACAAAAGGATCATCAATAACTTCGTAGCTTTCTTAGTACTTGTTGCGAACGATATG
CTAACAATGCCACAAGCGCATGGGTCGTCACAAGTAATAGTAAAACGGAAATATTCCGAGTATCGAATCCACAGGCAGGCGAAGCGAAATTTAAGCAAAGAAAAAATTCC
TTGA
Protein sequenceShow/hide protein sequence
MFQTLQNSNRAKFGPCAAKRPEDLSLGRTLCSKLYKTQTEESLDHVSSKPPEDLSLGRAIDSKLFKTQMEQSLDHVSSKLAEDLSLGQTLCSKLSKTQTEQSLDNVLPNH
LKTSHWAELCVPNSPKLKVSTKPTAFLNGNLEESIYLSQLEGFIAQDQEQKVCKLKRSIYGLKQASRSWNMRFDTAIKSFGFEQNVDEPCVYKRIINNFVAFLVLVANDM
LTMPQAHGSSQVIVKRKYSEYRIHRQAKRNLSKEKIP