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Lag0001087 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001087
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:24218253..24218762
RNA-Seq ExpressionLag0001087
SyntenyLag0001087
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]1.2e-4050.92Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+P  K+YDG  DP+ HL+ Y  W D +G+++AIRCR F FTLTGS R WF++LKR+SIS FKELA+AF+ +F G   + +P   L TIK++  ESL+
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL
        DY+ RFN E LQVEG ++   L+   +G++DE+L+ S GK    T++E  SRAQ YMS  EL+
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]8.4e-4254.66Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+PT KQ+DG  D V HL+AYR WMD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ +F+G R + +P   L TIK++  ESL 
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE
        DY+ RFN+E LQVEG +   +L+A  + + DE L  S GK  P T++E +SRAQKYMSA E
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]7.3e-4655.83Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+P   +YDG  DP+ HL+AYR W D + + +AIRCR F FTLTGSAR+WF +LKR SIS FKELA+AF+ +F+G R + KP   L TIK++  ESL+
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL
        +Y+ RFN+E LQVEG ++  AL+A  +G++DERL+ S GK  P T+ E +SRAQKYMSA EL+
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.4e-4355.9Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+PT KQ+D   DPV HL+AYR WMD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LA+AF+ +F+G R + +P   L TIK++  ESLR
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE
        DY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]4.9e-4254.66Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+PT K +DG  +PV HL+AYR WMD +GVSDAIRCR F  TL GSAR WF +LKR SIS FK LA+AF+ +F+G R + +P   L TIK++  ESL 
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE
        DY+ RFN+E LQ+EG ++  +L+A  +G+ DE L  S  K  P T++E +SRAQ+YMSA E
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166195.9e-4150.92Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+P  K+YDG  DP+ HL+ Y  W D +G+++AIRCR F FTLTGS R WF++LKR+SIS FKELA+AF+ +F G   + +P   L TIK++  ESL+
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL
        DY+ RFN E LQVEG ++   L+   +G++DE+L+ S GK    T++E  SRAQ YMS  EL+
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL

A0A6J1D7D2 uncharacterized protein LOC1110183074.1e-4254.66Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+PT KQ+DG  D V HL+AYR WMD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ +F+G R + +P   L TIK++  ESL 
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE
        DY+ RFN+E LQVEG +   +L+A  + + DE L  S GK  P T++E +SRAQKYMSA E
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE

A0A6J1DWY0 uncharacterized protein LOC1110252931.7e-4355.9Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+PT KQ+D   DPV HL+AYR WMD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LA+AF+ +F+G R + +P   L TIK++  ESLR
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE
        DY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE

A0A6J1DZ49 uncharacterized protein LOC1110248513.6e-4655.83Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+P   +YDG  DP+ HL+AYR W D + + +AIRCR F FTLTGSAR+WF +LKR SIS FKELA+AF+ +F+G R + KP   L TIK++  ESL+
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL
        +Y+ RFN+E LQVEG ++  AL+A  +G++DERL+ S GK  P T+ E +SRAQKYMSA EL+
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL

A0A6J1E1E7 uncharacterized protein LOC1110255482.4e-4254.66Show/hide
Query:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR
        +FK+PT K +DG  +PV HL+AYR WMD +GVSDAIRCR F  TL GSAR WF +LKR SIS FK LA+AF+ +F+G R + +P   L TIK++  ESL 
Subjt:  EFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLR

Query:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE
        DY+ RFN+E LQ+EG ++  +L+A  +G+ DE L  S  K  P T++E +SRAQ+YMSA E
Subjt:  DYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCACACGGTAGAATTTAAGGTACCCACGTTCAAACAGTACGATGGCAAGAAAGACCCCGTGCAACATCTAAACGCATACAGAAGCTGGATGGACTTCCACGGTGT
CTCAGATGCAATCAGGTGCCGCGCATTCTTTTTCACTCTGACAGGATCAGCCAGGCACTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAGGAGTTGGCCC
AAGCATTCCTTGCACGGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTCGACAATCAAAAAGCAGCCAGGTGAGAGTTTGCGTGATTACATAACGCGT
TTTAATGACGAAGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAGCCCTGGTAGCCATAACAGCCGGACTAGAAGACGAAAGACTACTCAATTCAATAGGTAAGAGCCA
ACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAAAAGTATATGAGCGCAGAGGAGTTACTGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCACACGGTAGAATTTAAGGTACCCACGTTCAAACAGTACGATGGCAAGAAAGACCCCGTGCAACATCTAAACGCATACAGAAGCTGGATGGACTTCCACGGTGT
CTCAGATGCAATCAGGTGCCGCGCATTCTTTTTCACTCTGACAGGATCAGCCAGGCACTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAGGAGTTGGCCC
AAGCATTCCTTGCACGGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTCGACAATCAAAAAGCAGCCAGGTGAGAGTTTGCGTGATTACATAACGCGT
TTTAATGACGAAGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAGCCCTGGTAGCCATAACAGCCGGACTAGAAGACGAAAGACTACTCAATTCAATAGGTAAGAGCCA
ACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAAAAGTATATGAGCGCAGAGGAGTTACTGAAATGA
Protein sequenceShow/hide protein sequence
MEHTVEFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLARFMGAREQRKPHINLSTIKKQPGESLRDYITR
FNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLK