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Lag0001110 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001110
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr4:24598791..24599553
RNA-Seq ExpressionLag0001110
SyntenyLag0001110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019077061.1 PREDICTED: uncharacterized protein LOC104879996 [Vitis vinifera]3.9e-1439.26Show/hide
Query:  MSDQQKGLVPTFNDV--------------------FLG------------ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNN
        +SD+QKGLV TF D+                    F G            AT+++  D  M EL KLDV AY+++  +  + WSRH+F    KSD L+NN
Subjt:  MSDQQKGLVPTFNDV--------------------FLG------------ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNN

Query:  KSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK
         +ESFNA+I EARDKP++ M+E+I  ++M R+  K
Subjt:  KSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK

XP_021716610.1 uncharacterized protein LOC110684460 [Chenopodium quinoa]2.4e-1645.28Show/hide
Query:  MSDQQKGLVPTFNDVFLGATSE-SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTR
        MSD+QKGL+  F DV    +S+  E + AM+ +  LD  AYQ++ N+  + WSRH+F T+CKS++LLNN  E+FNA I +ARDKPI+  +E + + +M R
Subjt:  MSDQQKGLVPTFNDVFLGATSE-SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTR

Query:  ITKKFQ
           K++
Subjt:  ITKKFQ

XP_021718799.1 uncharacterized protein LOC110686481 [Chenopodium quinoa]5.1e-1435.25Show/hide
Query:  MSDQQKGLVPTFNDVFLGATSE--SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMT
        MSD+QKGL+  F  +   A      + + AM+ +  L  +AY+Y++N+P++ WS+H+F   CKS++LLNN  E+FNA I +ARDKPI+  +E + K +M 
Subjt:  MSDQQKGLVPTFNDVFLGATSE--SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMT

Query:  RITKKFQIFSVAHFSDIGNYYKIESSSLALNWLSLECVN
        R   K++              K++  ++  +W S+ CV+
Subjt:  RITKKFQIFSVAHFSDIGNYYKIESSSLALNWLSLECVN

XP_021744830.1 uncharacterized protein LOC110710797 [Chenopodium quinoa]3.9e-1447.25Show/hide
Query:  MSDQQKGLVPTFNDVFLGATSE--SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQML
        MSD+QKGL+  F +V   A     ++ + AM+ +  L  +AY+Y+ N+P++ WSRH+F T+CKS++LLNN  E+FNA I EARDKPI+  +
Subjt:  MSDQQKGLVPTFNDVFLGATSE--SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQML

XP_021767746.1 uncharacterized protein LOC110732136 [Chenopodium quinoa]4.6e-1542.06Show/hide
Query:  MSDQQKGLVPTFNDVFLGATSE--SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMT
        MS+ QKGL+  F +V   A     ++ + AM+ +  L  +AY+Y+ N+P++ W+RH+F T+CKS++LLNN  E+FNA I EARDKPI+  +E + +  M 
Subjt:  MSDQQKGLVPTFNDVFLGATSE--SELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMT

Query:  RITKKFQ
        R   K++
Subjt:  RITKKFQ

TrEMBL top hitse value%identityAlignment
A0A2N9I5V2 CCHC-type domain-containing protein2.1e-1344.95Show/hide
Query:  MSDQQKGLVPTFNDVF-------LGATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIH
        MSDQQKGLVPTF  +          AT+ +E +  M+++  ++V A++++   P + WSR SF    K D L NN  ESFNA I E RDKPII M+E I 
Subjt:  MSDQQKGLVPTFNDVF-------LGATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIH

Query:  KLVMTRITK
         L+M R  K
Subjt:  KLVMTRITK

A0A2N9ILE3 SWIM-type domain-containing protein1.4e-1445.37Show/hide
Query:  MSDQQKGLVPTFNDVF--LGATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMT
        +SD+QKGL  +F DV   +   +E E D  M EL KL   AY+Y+  +P   WSR  F  + KSDL++NN SE FN++I +ARDKPI+ ML+ I + +M 
Subjt:  MSDQQKGLVPTFNDVF--LGATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMT

Query:  RITKKFQI
           K+FQ+
Subjt:  RITKKFQI

A0A438GPP9 SWIM-type domain-containing protein1.6e-1348.24Show/hide
Query:  ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK
        AT+++  D  M EL KLDV AY+++  +  + WSRH+F    KSD L+NN +ESFNA+I EARDKP++ M+E+I  ++M R+  K
Subjt:  ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK

A0A438JPT3 SWIM-type domain-containing protein1.6e-1348.24Show/hide
Query:  ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK
        AT+++  D  M EL KLDV AY+++  +  + WSRH+F    KSD L+NN +ESFNA+I EARDKP++ M+E+I  ++M R+  K
Subjt:  ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK

A0A438K4C8 ZnF_PMZ domain-containing protein1.6e-1348.24Show/hide
Query:  ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK
        AT+++  D  M EL KLDV AY+++  +  + WSRH+F    KSD L+NN +ESFNA+I EARDKP++ M+E+I  ++M R+  K
Subjt:  ATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTRITKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACCAACAAAAGGGATTGGTACCCACTTTCAATGATGTGTTTCTTGGAGCAACATCAGAGTCTGAGCTTGATGGAGCTATGAAGGAGTTGGTAAAACTTGACGT
GAATGCCTACCAATATGTAAAGAACATGCCTTCAAAGTTTTGGTCAAGGCACTCATTCCAAACCAGCTGTAAGTCCGACCTCCTTCTGAACAATAAGTCTGAGTCATTTA
ATGCTTTCATCAATGAAGCTAGGGACAAGCCCATAATACAGATGCTAGAAGTGATTCACAAGCTTGTGATGACTAGAATCACAAAGAAATTTCAGATCTTTTCAGTGGCT
CATTTTTCTGATATAGGCAACTACTATAAAATTGAATCTTCCTCTTTAGCTCTTAATTGGTTAAGCTTAGAATGTGTCAACATGTATCCAAAATTGAATACGGACCAAAA
CTGTGAAATGACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACCAACAAAAGGGATTGGTACCCACTTTCAATGATGTGTTTCTTGGAGCAACATCAGAGTCTGAGCTTGATGGAGCTATGAAGGAGTTGGTAAAACTTGACGT
GAATGCCTACCAATATGTAAAGAACATGCCTTCAAAGTTTTGGTCAAGGCACTCATTCCAAACCAGCTGTAAGTCCGACCTCCTTCTGAACAATAAGTCTGAGTCATTTA
ATGCTTTCATCAATGAAGCTAGGGACAAGCCCATAATACAGATGCTAGAAGTGATTCACAAGCTTGTGATGACTAGAATCACAAAGAAATTTCAGATCTTTTCAGTGGCT
CATTTTTCTGATATAGGCAACTACTATAAAATTGAATCTTCCTCTTTAGCTCTTAATTGGTTAAGCTTAGAATGTGTCAACATGTATCCAAAATTGAATACGGACCAAAA
CTGTGAAATGACCTAA
Protein sequenceShow/hide protein sequence
MSDQQKGLVPTFNDVFLGATSESELDGAMKELVKLDVNAYQYVKNMPSKFWSRHSFQTSCKSDLLLNNKSESFNAFINEARDKPIIQMLEVIHKLVMTRITKKFQIFSVA
HFSDIGNYYKIESSSLALNWLSLECVNMYPKLNTDQNCEMT