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Lag0001111 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001111
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGRF-type domain-containing protein
Genome locationchr4:24599899..24600375
RNA-Seq ExpressionLag0001111
SyntenyLag0001111
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6471955.1 hypothetical protein ZIOFF_069408 [Zingiber officinale]4.0e-1250Show/hide
Query:  DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
        +  ET N+S C+CGLRA L TSW + NPGRRF+ CP ++    GC FF W DPE+SE  K +IN       KL+ E+  LKK
Subjt:  DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
KAG6505340.1 hypothetical protein ZIOFF_037695 [Zingiber officinale]3.1e-1250Show/hide
Query:  DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
        +  ET N+S C+CGLRA L TSW + NPGRRF+ CP ++    GC FF W DPE+SE  K +IN       KL+ E+  LKK
Subjt:  DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
KAG6514370.1 hypothetical protein ZIOFF_024723 [Zingiber officinale]4.0e-1251.32Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
        CHCGLRA L TSWT+ NPGR F+ CP Y+ +     +GC FF W DPE+SE +K +IN       KL+ E+  LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]6.2e-1355.56Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
        CHCGLRA L TSWT+ NPGRRF+ CP Y+    GC FF W DPE+SE +K +IN       KL+ E+  LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
XP_042395711.1 uncharacterized protein LOC121986018 [Zingiber officinale]3.1e-1250Show/hide
Query:  DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
        +  ET N+S C+CGLRA L TSW + NPGRRF+ CP ++    GC FF W DPE+SE  K +IN       KL+ E+  LKK
Subjt:  DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN-------KLRDEVGRLKK
TrEMBL top hitse value%identityAlignment
A0A0B2QQH9 GRF-type domain-containing protein (Fragment)1.4e-1047.95Show/hide
Query:  SETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNG-SGCEFFYWCDPEVSEHNKEVINKLRDEVGRLK
        SE ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G   C FF W DP  +   K++I  L  EV  LK
Subjt:  SETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNG-SGCEFFYWCDPEVSEHNKEVINKLRDEVGRLK
A0A445HAE1 GRF-type domain-containing protein2.1e-1142.22Show/hide
Query:  EESIRGDNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCEFFYWCDPEVSEHNKEVINKLRDEVGRLKKIAQNLRRL
        E S     S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I  L  EV  LK   ++L+ +
Subjt:  EESIRGDNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCEFFYWCDPEVSEHNKEVINKLRDEVGRLKKIAQNLRRL
A0A445ILI1 GRF-type domain-containing protein8.1e-1142.22Show/hide
Query:  EESIRGDNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCEFFYWCDPEVSEHNKEVINKLRDEVGRLKKIAQNLRRL
        E S      E ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I  L  EV  LK   ++L+ +
Subjt:  EESIRGDNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCEFFYWCDPEVSEHNKEVINKLRDEVGRLKKIAQNLRRL
A0A6P5F2H3 uncharacterized protein LOC1097116088.1e-1155.38Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVINKLRDEVGRLKK
        C CGL+A   TS T  NPGRRFYGC  YK N   C+FF W DPE+ E  KE I +L +++G LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVINKLRDEVGRLKK
A0A6V7NYI1 GRF-type domain-containing protein1.6e-1158.46Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVINKLRDEVGRLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GC FF W DPE+ E  KE I +L +++GRLKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVINKLRDEVGRLKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein9.5e-0443.18Show/hide
Query:  HCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCD
        HC   A     +TS T++NP RRFY CP        C +F WCD
Subjt:  HCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCD
AT3G42860.1 zinc knuckle (CCHC-type) family protein3.2e-0758.14Show/hide
Query:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCD
        C CG+   LI TS T +NPGR+FY CP  + NG GC FF WCD
Subjt:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGCCACATAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCTTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGAGTTTTTTTATTGGT
GTGATCCAGAAGTATCAGAACACAACAAAGAAGTGATTAACAAACTAAGAGACGAAGTTGGTCGGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTAT
TGTGTAATAATTGTAGTATTGGTGGACATTTTAGTGATTGTATTTGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGCCACATAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCTTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGAGTTTTTTTATTGGT
GTGATCCAGAAGTATCAGAACACAACAAAGAAGTGATTAACAAACTAAGAGACGAAGTTGGTCGGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTAT
TGTGTAATAATTGTAGTATTGGTGGACATTTTAGTGATTGTATTTGGGTTTTGA
Protein sequenceShow/hide protein sequence
MSREMPHKLSKIAMDNFEESIRGDNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVINKLRDEVGRLKKIAQNLRRLEWLY
CVIIVVLVDILVIVFGF