; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001127 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001127
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiongeneral transcription factor 3C polypeptide 5-like
Genome locationchr4:24873468..24880149
RNA-Seq ExpressionLag0001127
SyntenyLag0001127
Gene Ontology termsGO:0006384 - transcription initiation from RNA polymerase III promoter (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR040454 - Transcription factor IIIC subunit Tfc1/Sfc1
IPR041499 - Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain
IPR042536 - TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588837.1 General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. sororia]1.1e-9088.11Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILKVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KS++ EGI KVEKEV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        PREDE+NLDFEMVA VPEAYHFEGM DYQHVVA H DAT+RKKG+WTE+HEPCLGKVNAIDVDKEDTMILVPPLFA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

XP_022927790.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata]3.7e-9188.65Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILKVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KSD+ EGI KVEKEV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        PREDE+NLDFEMVA VPEAYHFEGM DYQHVVA H DAT+RKKG+WTE+HEPCLGKVNAIDVDKEDTMILVPPLFA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

XP_022989615.1 general transcription factor 3C polypeptide 5-like [Cucurbita maxima]1.3e-8887.57Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRAIETLGG QSILKVR LQ NKLELRFRPED YSHPT+GELRPCSCFLLKI H KSD+ EGI  VEKEV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        PREDE+NLDFEMVA VPEAYHFEGM DYQHVVA H DAT+RKKGNWTE+HEPCLGKVNAIDVDKEDTMILVPP+FA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

XP_023530657.1 general transcription factor 3C polypeptide 5-like [Cucurbita pepo subsp. pepo]2.8e-9188.65Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILKVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KSD+ EGI KVEKEV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        PREDE+NLDFEMVA VPEAYHFEGM DYQHVVA H DAT+RKKG+WTE+HEPCLGKVNAIDVDKEDTMILVPPLFA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

XP_038888320.1 general transcription factor 3C polypeptide 5-like [Benincasa hispida]8.8e-9388.65Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDN+ISG LPTA++FAVHYPGYP SKRRAIE+LGGTQSILKVR +Q +KLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        PREDE NLDFEMVARVPEAYHFEGM+DYQHV+AVH DATRRKKGNW E+HEPCLGK NA+DVDKEDTMILVPPLF+ KDVPE+LV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

TrEMBL top hitse value%identityAlignment
A0A0A0KV91 Uncharacterized protein1.0e-8687.57Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDNTISG LPTA++FAVHYP YPSSK +AIE+LGGTQSILKVR LQ NKLELRFRP DPYSHPTYGELRPCS FLLKICHSKSDT EGIMKVE EV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        P EDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVH DAT+RKKGNW E+HEP LGK NAIDVDKEDTMILVPPLF+ KDVPE+LV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

A0A6J1DTW8 general transcription factor 3C polypeptide 5-like isoform X12.5e-8583.6Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKL+DNTISG LPT  +FAVHYPGYP SKRRAIETLGGTQSILKV  LQ NKLELRFRPEDPYSHPTYGELRPC CFLLKICHSK D IEGIMK E+EV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCL----GKVNAIDVDKEDTMILVPPLFANKDVPESLV
        P EDEVNL FEMVA VPEAYHFEGM DYQHVVA H DAT+RKKG+WTE+ EPCL    GKVN IDVDKED MILVPPLFA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCL----GKVNAIDVDKEDTMILVPPLFANKDVPESLV

A0A6J1DVT1 general transcription factor 3C polypeptide 5-like isoform X24.5e-8785.41Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKL+DNTISG LPT  +FAVHYPGYP SKRRAIETLGGTQSILKV  LQ NKLELRFRPEDPYSHPTYGELRPC CFLLKICHSK D IEGIMK E+EV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        P EDEVNL FEMVA VPEAYHFEGM DYQHVVA H DAT+RKKG+WTE+ EPCLGKVN IDVDKED MILVPPLFA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

A0A6J1EPX9 general transcription factor 3C polypeptide 5-like1.8e-9188.65Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILKVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KSD+ EGI KVEKEV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        PREDE+NLDFEMVA VPEAYHFEGM DYQHVVA H DAT+RKKG+WTE+HEPCLGKVNAIDVDKEDTMILVPPLFA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

A0A6J1JKL2 general transcription factor 3C polypeptide 5-like6.3e-8987.57Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRAIETLGG QSILKVR LQ NKLELRFRPED YSHPT+GELRPCSCFLLKI H KSD+ EGI  VEKEV
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEV

Query:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
        PREDE+NLDFEMVA VPEAYHFEGM DYQHVVA H DAT+RKKGNWTE+HEPCLGKVNAIDVDKEDTMILVPP+FA KDVPESLV
Subjt:  PREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV

SwissProt top hitse value%identityAlignment
Q54GS8 General transcription factor 3C polypeptide 55.5e-1323.77Show/hide
Query:  DNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKV-RSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKI----------------------
        D  I   LPT   + + YP    +  +AIE++GG   I  V +S ++  L+L+FRP +P   PT+G   P    LL++                      
Subjt:  DNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKV-RSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKI----------------------

Query:  ------CHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAI----------------
                S   T     + +++ P+E+E   D  ++A VP    F+G+ D+Q+++    + T+ +  N  +       K   I                
Subjt:  ------CHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAI----------------

Query:  DVDKEDTMILVPPLFANKDVPES
        ++ K++ M L+PPLF+  D P++
Subjt:  DVDKEDTMILVPPLFANKDVPES

Q8R2T8 General transcription factor 3C polypeptide 53.5e-1228.07Show/hide
Query:  RSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARV
        R   V YPG   ++ + ++TLGG +S+ ++ +    +LEL FRP+DPY HP        S  LL+I   ++    G++  E       +V  + E++  +
Subjt:  RSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARV

Query:  PEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKED------TMILVPPLFANKDVP
           Y F+GM D+Q+ +AVH +A  +        H     +V     +KE+       + + PP+F+  D P
Subjt:  PEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKED------TMILVPPLFANKDVP

Q9Y5Q8 General transcription factor 3C polypeptide 59.3e-1329.24Show/hide
Query:  RSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARV
        R   V YPG      + + TLGG + + ++ +    +LEL FRP+DPY HP        S  LL+I   ++   +G++  E       EV  D E++  +
Subjt:  RSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARV

Query:  PEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKED------TMILVPPLFANKDVP
           Y F+GM D+Q+ +AVH +A  +        H     KV  +  +KE        + + PP+F+  D P
Subjt:  PEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKED------TMILVPPLFANKDVP

Arabidopsis top hitse value%identityAlignment
AT3G49410.1 Transcription factor IIIC, subunit 51.7e-4647.59Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTIEGIMKVEK
        MG +++ TISGTLP+  +F VH+PGYPSS  RAIETLGG Q I + R    NKLELRFRPEDPY+HP  GE RPCS FLL+I     K    + ++   +
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTIEGIMKVEK

Query:  EVPRED-EVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESL
        +V  E+    L  ++VAR+ E++HF+GM DYQHV+ +H D  ++KK  W ++ +P  GK + + +  ED M+L+P  FA KD+P+++
Subjt:  EVPRED-EVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESL

AT5G24450.1 Transcription factor IIIC, subunit 52.3e-4347.37Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTI---EGIMK
        MG +++ TISG LP+  +F VHYPGYPSS  RA+ETLGG Q I   R    NKLEL FRPEDP +HP YGE R C+ FLLKI     K D++   + ++ 
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTI---EGIMK

Query:  VEKEVPREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV
               E    L  ++VARV E+Y F+GMVDYQHV+ +H D  ++KK  W E+ +   GK + +D+  ED M+L+P  F+ KD P++LV
Subjt:  VEKEVPREDEVNLDFEMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGCTGAAAGACAACACTATCTCAGGGACCTTACCTACTGCCCGGAGTTTTGCAGTTCACTATCCTGGTTATCCTTCATCCAAGCGACGGGCAATTGAAACTCT
CGGAGGAACACAATCAATTCTCAAGGTTCGTAGTCTCCAACAAAATAAGTTAGAGCTTCGCTTTAGACCTGAAGACCCATATTCACATCCAACGTATGGGGAGCTTCGTC
CATGCAGTTGTTTTCTTTTGAAAATATGTCATTCAAAAAGTGATACTATTGAGGGAATCATGAAAGTTGAAAAAGAAGTACCTAGAGAAGATGAAGTAAACCTTGATTTT
GAGATGGTTGCTCGCGTGCCTGAAGCATATCATTTTGAGGGCATGGTTGACTACCAACATGTTGTTGCTGTTCATGGGGATGCTACACGAAGGAAGAAGGGGAACTGGAC
AGAAATACACGAGCCATGTTTAGGGAAGGTTAATGCCATTGACGTGGACAAGGAGGATACTATGATTTTAGTTCCTCCACTATTTGCAAATAAGGATGTGCCTGAAAGTT
TAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGCTGAAAGACAACACTATCTCAGGGACCTTACCTACTGCCCGGAGTTTTGCAGTTCACTATCCTGGTTATCCTTCATCCAAGCGACGGGCAATTGAAACTCT
CGGAGGAACACAATCAATTCTCAAGGTTCGTAGTCTCCAACAAAATAAGTTAGAGCTTCGCTTTAGACCTGAAGACCCATATTCACATCCAACGTATGGGGAGCTTCGTC
CATGCAGTTGTTTTCTTTTGAAAATATGTCATTCAAAAAGTGATACTATTGAGGGAATCATGAAAGTTGAAAAAGAAGTACCTAGAGAAGATGAAGTAAACCTTGATTTT
GAGATGGTTGCTCGCGTGCCTGAAGCATATCATTTTGAGGGCATGGTTGACTACCAACATGTTGTTGCTGTTCATGGGGATGCTACACGAAGGAAGAAGGGGAACTGGAC
AGAAATACACGAGCCATGTTTAGGGAAGGTTAATGCCATTGACGTGGACAAGGAGGATACTATGATTTTAGTTCCTCCACTATTTGCAAATAAGGATGTGCCTGAAAGTT
TAGTGTAA
Protein sequenceShow/hide protein sequence
MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDF
EMVARVPEAYHFEGMVDYQHVVAVHGDATRRKKGNWTEIHEPCLGKVNAIDVDKEDTMILVPPLFANKDVPESLV