; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001140 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001140
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:25171072..25171526
RNA-Seq ExpressionLag0001140
SyntenyLag0001140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054154.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-0842.39Show/hide
Query:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK
        I+E      VA  I K + E  K  + +K+NPL+++    S + K   +  VMSV MAD+  +  + EMERK+N LMKAV+ERDHEI  L++
Subjt:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0842.86Show/hide
Query:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK
        +E      VA  I K + E  K  + +K+NPL+++   +S + K   +  VMSV MAD+  +  +AEMERK+N LMKAV+ERDHEI  L++
Subjt:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK

KAA0062459.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-0843.33Show/hide
Query:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK
        +++ +S+     + +LIE   K ++ ++DNPLF + TPTS       +  VMSV M D   +  +AEM+RK+N LMK V ERDHEIA LK
Subjt:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK

TYK00345.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-0842.86Show/hide
Query:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK
        I+E     T+   I K + E  K ++ +++NPLFE  T  S+  +  L+  V+SV M DV  +  +A +ERK+N LMKA++ERDHEIA LK
Subjt:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK

XP_038896620.1 aspartic proteinase Asp1-like [Benincasa hispida]1.6e-0843.75Show/hide
Query:  MAPKKALVK---IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERD
        MAPKK   K     + + S  +   I   + EF K ++ +K+NPLFE+ T T + P+   + +V+SV MADV  +  +AEMERK+N LMKAV+ERD
Subjt:  MAPKKALVK---IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERD

TrEMBL top hitse value%identityAlignment
A0A5A7UG56 Ty3-gypsy retrotransposon protein7.8e-0942.39Show/hide
Query:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK
        I+E      VA  I K + E  K  + +K+NPL+++    S + K   +  VMSV MAD+  +  + EMERK+N LMKAV+ERDHEI  L++
Subjt:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK

A0A5D3BMP8 Ty3-gypsy retrotransposon protein7.8e-0942.86Show/hide
Query:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK
        I+E     T+   I K + E  K ++ +++NPLFE  T  S+  +  L+  V+SV M DV  +  +A +ERK+N LMKA++ERDHEIA LK
Subjt:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.0e-0842.86Show/hide
Query:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK
        +E      VA  I K + E  K  + +K+NPL+++   +S + K   +  VMSV MAD+  +  +AEMERK+N LMKAV+ERDHEI  L++
Subjt:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKK

A0A5D3C3J8 Ty3-gypsy retrotransposon protein2.3e-0839Show/hide
Query:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKKLLNLAIPL
        I+E      VA  I K + E  K  + +K+NPL+++    S + K   +  VMSV MAD+  +  +AEMERK+N LM  V+ERDHEI  L++ +    P+
Subjt:  IKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKKLLNLAIPL

A0A5D3DUR4 Ty3-gypsy retrotransposon protein7.8e-0943.33Show/hide
Query:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK
        +++ +S+     + +LIE   K ++ ++DNPLF + TPTS       +  VMSV M D   +  +AEM+RK+N LMK V ERDHEIA LK
Subjt:  KEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCACCAAAGAAAGCTCTTGTGAAGATCAAGGAGGATCACACTTCTCTCACTGTTGCAAGTAGGATTTCAAAATTGATTGAAGAATTCTCTAAGGACAAGGTTGG
AGTCAAAGACAACCCATTATTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGACACACTAAATTCTCATGTGATGTCTGTCACGATGGCTGATGTAGACCAGGATG
AAAGAATTGCGGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCATGAGATAGCCTATTTGAAGAAACTGCTGAATCTAGCCATACCCCTG
CTGCACGAAAAAATGATAAGGGGAAGGCTATTGTCCATGAGGACCAACCACAACACTCGACGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGCACCAAAGAAAGCTCTTGTGAAGATCAAGGAGGATCACACTTCTCTCACTGTTGCAAGTAGGATTTCAAAATTGATTGAAGAATTCTCTAAGGACAAGGTTGG
AGTCAAAGACAACCCATTATTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGACACACTAAATTCTCATGTGATGTCTGTCACGATGGCTGATGTAGACCAGGATG
AAAGAATTGCGGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCATGAGATAGCCTATTTGAAGAAACTGCTGAATCTAGCCATACCCCTG
CTGCACGAAAAAATGATAAGGGGAAGGCTATTGTCCATGAGGACCAACCACAACACTCGACGTTAG
Protein sequenceShow/hide protein sequence
MMAPKKALVKIKEDHTSLTVASRISKLIEEFSKDKVGVKDNPLFESVTPTSEQPKDTLNSHVMSVTMADVDQDERIAEMERKLNLLMKAVDERDHEIAYLKKLLNLAIPL
LHEKMIRGRLLSMRTNHNTRR