| GenBank top hits | e value | %identity | Alignment |
|---|
| RVW64278.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.6e-101 | 30.79 | Show/hide |
Query: PRPQFGMYHPQLFSFVQPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR-------
P Q HP++ ++ F P++ QA +V+L SNYL W+ Q+LN++ A GL+ I+G IP P ++L + + +NPE+SIWQ+ NR
Subjt: PRPQFGMYHPQLFSFVQPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR-------
Query: SSEVSALAIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEG---LGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQ
SS + + GL + + +S + L+ + +G LG+EYN+FV ++ E +E++ ++LL++E RLE+Q + ++ N +Q
Subjt: SSEVSALAIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEG---LGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQ
Query: ANFARLQVGSSNNLRQGS-RFPHQSANRDRQTQQVQSAGILGKPSSSPSN------RWPSRTSPNNPP---------------RILCQICNKYGHTAFVC
AN + + N Q S +F Q Q Q G+ +N P R S NN + CQ+C KYGH A C
Subjt: ANFARLQVGSSNNLRQGS-RFPHQSANRDRQTQQVQSAGILGKPSSSPSN------RWPSRTSPNNPP---------------RILCQICNKYGHTAFVC
Query: HHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLL
+HR + +QP+ N + + + T S + D++WYMD+GATHH+TP+LN L++ P+ G +KV+VGNG L IS+IG S +
Subjt: HHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLL
Query: SMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSF----------SNMSARSSLP------RAAV
S S+ ++L ++LH P ++ LIS+++LC DN +VEF+ + F+VKD +K+ LL+GNL GLYKLSSS + ++ R+SL + +
Subjt: SMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSF----------SNMSARSSLP------RAAV
Query: LLSKTTDVWHSRLGHPSSLVLKQILEFY----------------------------------YSSVHA---------------------------TYAYL
LS D+WH RLGHP+ ++ ++L ++ VH+ ++ YL
Subjt: LLSKTTDVWHSRLGHPSSLVLKQILEFY----------------------------------YSSVHA---------------------------TYAYL
Query: -----TCISNYRQFYSYI--------------------------------------SLSPQPYRFTRN---------LPFPFLASLSSSPS---------
IS + QF I S S Q R R P L SSSPS
Subjt: -----TCISNYRQFYSYI--------------------------------------SLSPQPYRFTRN---------LPFPFLASLSSSPS---------
Query: ----------------PLSHHRPPPPTNTHPMLTRSKQGIFQPKVWTTLT-SLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----
P S H P P HPM TR+K GIF+PK++ + T ++ + EP S+K A+ P+W+ AM E AL N TW LVPPP
Subjt: ----------------PLSHHRPPPPTNTHPMLTRSKQGIFQPKVWTTLT-SLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----
Query: VGCR----------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSS
+GCR P D F + + + PPGFVD + +VC L KA+YGLKQ+PRAWF KLSS LV WGFS S
Subjt: VGCR----------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSS
Query: KSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
++D+S+F + + +L++LVYVDDII TG++ L+ LIS LNS F LKDLG L+
Subjt: KSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
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| RVW64436.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.5e-102 | 31.59 | Show/hide |
Query: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------SSEVSALAI-------KKD
++ AL +KL SNY+ WK Q+ NVVYA G + +I G+ PP+ L LNP+F W++ +R SS+ + + KK
Subjt: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------SSEVSALAI-------KKD
Query: GLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQANFARLQVGSSNNLR
G ++ Y+ K+K ++D L+++GEPV +DHI +L GLG +YN+ V S+ R + + V ++LL++E RL Q S + +FA + S + R
Subjt: GLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQANFARLQVGSSNNLR
Query: QGSRFPHQSANRDRQTQ-QVQSAGILGKPSS-----SPSNRWPSRTSPNNP----PRILCQICNKYGHTAFVCHHRANLQFQPSFNQNPSPQALFSQFSA
Q +R PHQ + + ++ Q Q + +P + P N P ++ N P R CQ+C K+GHTA C+HR ++ +Q + N P QA FS
Subjt: QGSRFPHQSANRDRQTQ-QVQSAGILGKPSS-----SPSNRWPSRTSPNNP----PRILCQICNKYGHTAFVCHHRANLQFQPSFNQNPSPQALFSQFSA
Query: PNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHTPSISHKLISISK
+ ++ D+W+ D+GATHH++ +LS PY+G ++V +G+G +LPI + G+ SK L+ VLH P +S LIS+SK
Subjt: PNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHTPSISHKLISISK
Query: LCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTD--VWHSRLGHPSSLVLKQILEFYYSSVHA-------
C DN EF+ S+F VKD +TK++LL+G L GLY+ SS SS PRA V +D +WHSRLGHP+ +L + L ++ S +
Subjt: LCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTD--VWHSRLGHPSSLVLKQILEFYYSSVHA-------
Query: ------------------------TYAYLT--------------------------------------CISNYRQFYS----------------------
TYA+ T C + R +
Subjt: ------------------------TYAYLT--------------------------------------CISNYRQFYS----------------------
Query: ----------YIS------------------LSPQPYR-------------------------FTRN-----LPFPFLASLSSSPSPLSHHRPPPPTNTH
YIS SP P+ T N +P PF S ++PSP PP P NTH
Subjt: ----------YIS------------------LSPQPYR-------------------------FTRN-----LPFPFLASLSSSPSPLSHHRPPPPTNTH
Query: PMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----VGCR---------------------------
PM+TR+K GI + + + + EP +Y +A W AM E AL RN TWSLVPPP VGCR
Subjt: PMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----VGCR---------------------------
Query: ---------------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSS
QLDV NAFLNGDL EE+ M QP GFV+ YVC L+KA+YGLKQ+PRAWF KL L+ +GF S
Subjt: ---------------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSS
Query: SKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
S++D+S+F F + DILI+LVYVDDI+ TG+NPTL+S IS L+++F L+DLG LS
Subjt: SKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
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| RVW65725.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 9.6e-102 | 32.47 | Show/hide |
Query: QPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNRS----------------------
Q ST+ P Y + L VKL +NY+ W++Q+ NV++A G + FI+G+ P + D +NP F W++ +R+
Subjt: QPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNRS----------------------
Query: --SEVSAL--------------------AIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLS
S +AL + KK +++ Y+ KIK AD L++IGEP+S +D + +L GLGS+YNA VT+I R + +E + ++LL+
Subjt: --SEVSAL--------------------AIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLS
Query: YEYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSR----------FPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYG
+E+RLE+QSSI+Q++ AN+A SS+N R G R +P+ + R + G G+ +SSPS + P+ CQ+C K+G
Subjt: YEYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSR----------FPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYG
Query: HTAFVCHHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSI
HTA +C+HR ++ FQ Q +L + N P+ +S P D++WY+DSGA+HH+T +L +L++ PYTG ++V +GNG +L IS+I
Subjt: HTAFVCHHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSI
Query: GSSYLLSMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSK------
GS L S + L V H P IS LIS++K C +N A +EF+ + F VKDL TK VL +G LE GLYK FSN+ SS+ A+ S+
Subjt: GSSYLLSMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSK------
Query: -TTDVWHSRLGHPSSLVLKQIL-----------EFYYSSVHATYAY--------------------------LTCISN-----YRQFYSYISLSPQPYRF
++WH+RLGH S ++ +++ F S T+ Y + C+ + +R F S++ +RF
Subjt: -TTDVWHSRLGHPSSLVLKQIL-----------EFYYSSVHATYAY--------------------------LTCISN-----YRQFYSYISLSPQPYRF
Query: T---------------------------------------------------------RNLPFPF---LASLSSSPSPLSH-----------HRPPPPTN
+ R P P+ S+SS S +SH P T+
Subjt: T---------------------------------------------------------RNLPFPF---LASLSSSPSPLSH-----------HRPPPPTN
Query: THP----------------------------MLTRSKQGIFQPKVWTTLTSLDLSVI---EPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP---
+ P M TRS +GI + K T LDLS I EP++ K+A P+W AME E++AL RN TW LV P
Subjt: THP----------------------------MLTRSKQGIFQPKVWTTLTSLDLSVI---EPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP---
Query: --VGCR-PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDI
+G QLDV+NAFLNG+L E+++M QPPG+ D+ VC L KA+YGLKQ+PRAWF +LSS L+ WGFS S++DSS+F LI+LVYVDDI
Subjt: --VGCR-PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDI
Query: IATGNNPTLLSSLISRLNSQFMLKDLG
+ TG++ T +SSLI++L+S F L+ G
Subjt: IATGNNPTLLSSLISRLNSQFMLKDLG
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| RVX01903.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 7.4e-102 | 29.77 | Show/hide |
Query: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
PS+ + + AL +KL +NY+ W+ Q+ NVV+A G + I G PPQ + + NP+F +W++ +R SS
Subjt: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
Query: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
+ A+ +K LT+ +Y+ K+K +AD L++IGEPV+ +D I +L GLG++YN+ V S+ R + + V ++LL++
Subjt: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
Query: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
E RL Q+S+ + N I AN A Q NN R S+ ++RQ+ G + +N S++S + P CQ+C K+GHT C+HR +
Subjt: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
Query: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
+ FQ NP+ + Q + PN + + Q + + S I D+AW+ D+GATHH++ ++ LS+ PY G +KVIVGNG +L I G+++ S SK
Subjt: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
Query: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVL-LSKTTDVWHSRLGHPS
L VLH P I+ LIS+S+ C DN EF+P F VKD +TK++LL+G+LE GLY+ + F A SS R++ L L+ TT +WHSRLGHP+
Subjt: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVL-LSKTTDVWHSRLGHPS
Query: SLVLKQI--------------------------LEFYYSSVHATY-------------------------------------------------------
+LK I L F S A++
Subjt: SLVLKQI--------------------------LEFYYSSVHATY-------------------------------------------------------
Query: -------AYLTCI-----SNYRQFYSYISLSPQPYRF----------------------------TRNLPFPF--------------------------L
+ + C+ ++ F SY++ +F T +LPF F +
Subjt: -------AYLTCI-----SNYRQFYSYISLSPQPYRF----------------------------TRNLPFPF--------------------------L
Query: ASLSSSPSPLSHHRP--------------------------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSAL
+SL S +P + P P PTN HPM+TR+K GI + KV+ + EPT++ +A+ +W LAME + SAL
Subjt: ASLSSSPSPLSHHRP--------------------------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSAL
Query: RRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEEIH
+RN+TW LVPPP +GC+ QLDV NAFL+GDL E +
Subjt: RRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEEIH
Query: MEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDL
M+QPPGF++S +VC LNKA+YGLKQ+PRAW+ KL++ L+ WGF +S++DSS+F + D+LI+L+YVDDI+ G++ +SS I+RLNS F L+DL
Subjt: MEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDL
Query: G
G
Subjt: G
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| RVX12711.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.5e-102 | 31.78 | Show/hide |
Query: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
PS+ + + AL +KL +NY+ W+ Q+ NVV+A G + I G PPQ + + NP+F +W++ +R SS
Subjt: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
Query: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
+ A+ +K LT+ +Y+ K+K +AD L++IGEPV+ +D I +L GLG++YN+ V S+ R + + V ++LL++
Subjt: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
Query: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
E RL Q+SI + N I AN A Q NN R S+ ++RQ+ G + +N S++S + P CQ+C K+GHT C+HR +
Subjt: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
Query: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
+ FQ NP+ + Q + PN + + Q + + S I D+AW+ D+GATHH++ ++ LS+ PY G +KVIVGNG +L I +++ S SK
Subjt: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
Query: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVLLSKT-TDVW--------
L VLH P I+ LIS+S+ C DN EF+P FF VKD +TK++LL+G+LE GLY+ + F A SS RA+ L+ D+W
Subjt: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVLLSKT-TDVW--------
Query: ------------HSRLG-----HPSSLVLKQILEFYYSSVHATYAYLTCI-----SNYRQFYSYISLSPQPYRF--------------------------
SR H L ++F + + + C+ ++ F SY++ +F
Subjt: ------------HSRLG-----HPSSLVLKQILEFYYSSVHATYAYLTCI-----SNYRQFYSYISLSPQPYRF--------------------------
Query: --TRNLP----------FPFLASLSSSPSPLSHHRP-------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELS
T +LP FPF ++ S S ++ P PP ++ M+TR+K GI + KV+ + EPT++ +A+ +W LAME E S
Subjt: --TRNLP----------FPFLASLSSSPSPLSHHRP-------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELS
Query: ALRRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEE
AL+RN+TW LVPPP +GC+ QLDV NAFL+GDL E
Subjt: ALRRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEE
Query: IHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLK
+ M+QPPGF++S +VC LNKA+YGLKQ+PRAW+ KLS+ L+ WGF +S++DSS+F + D+LI+L+YVDDI+ TG++ +SS I+RLNS F L+
Subjt: IHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLK
Query: DLG
DLG
Subjt: DLG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438FWG3 Retrovirus-related Pol polyprotein from transposon RE1 | 8.0e-102 | 30.79 | Show/hide |
Query: PRPQFGMYHPQLFSFVQPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR-------
P Q HP++ ++ F P++ QA +V+L SNYL W+ Q+LN++ A GL+ I+G IP P ++L + + +NPE+SIWQ+ NR
Subjt: PRPQFGMYHPQLFSFVQPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR-------
Query: SSEVSALAIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEG---LGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQ
SS + + GL + + +S + L+ + +G LG+EYN+FV ++ E +E++ ++LL++E RLE+Q + ++ N +Q
Subjt: SSEVSALAIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEG---LGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQ
Query: ANFARLQVGSSNNLRQGS-RFPHQSANRDRQTQQVQSAGILGKPSSSPSN------RWPSRTSPNNPP---------------RILCQICNKYGHTAFVC
AN + + N Q S +F Q Q Q G+ +N P R S NN + CQ+C KYGH A C
Subjt: ANFARLQVGSSNNLRQGS-RFPHQSANRDRQTQQVQSAGILGKPSSSPSN------RWPSRTSPNNPP---------------RILCQICNKYGHTAFVC
Query: HHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLL
+HR + +QP+ N + + + T S + D++WYMD+GATHH+TP+LN L++ P+ G +KV+VGNG L IS+IG S +
Subjt: HHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLL
Query: SMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSF----------SNMSARSSLP------RAAV
S S+ ++L ++LH P ++ LIS+++LC DN +VEF+ + F+VKD +K+ LL+GNL GLYKLSSS + ++ R+SL + +
Subjt: SMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSF----------SNMSARSSLP------RAAV
Query: LLSKTTDVWHSRLGHPSSLVLKQILEFY----------------------------------YSSVHA---------------------------TYAYL
LS D+WH RLGHP+ ++ ++L ++ VH+ ++ YL
Subjt: LLSKTTDVWHSRLGHPSSLVLKQILEFY----------------------------------YSSVHA---------------------------TYAYL
Query: -----TCISNYRQFYSYI--------------------------------------SLSPQPYRFTRN---------LPFPFLASLSSSPS---------
IS + QF I S S Q R R P L SSSPS
Subjt: -----TCISNYRQFYSYI--------------------------------------SLSPQPYRFTRN---------LPFPFLASLSSSPS---------
Query: ----------------PLSHHRPPPPTNTHPMLTRSKQGIFQPKVWTTLT-SLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----
P S H P P HPM TR+K GIF+PK++ + T ++ + EP S+K A+ P+W+ AM E AL N TW LVPPP
Subjt: ----------------PLSHHRPPPPTNTHPMLTRSKQGIFQPKVWTTLT-SLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----
Query: VGCR----------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSS
+GCR P D F + + + PPGFVD + +VC L KA+YGLKQ+PRAWF KLSS LV WGFS S
Subjt: VGCR----------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSS
Query: KSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
++D+S+F + + +L++LVYVDDII TG++ L+ LIS LNS F LKDLG L+
Subjt: KSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
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| A0A438FWU8 Retrovirus-related Pol polyprotein from transposon RE1 | 7.2e-103 | 31.59 | Show/hide |
Query: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------SSEVSALAI-------KKD
++ AL +KL SNY+ WK Q+ NVVYA G + +I G+ PP+ L LNP+F W++ +R SS+ + + KK
Subjt: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------SSEVSALAI-------KKD
Query: GLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQANFARLQVGSSNNLR
G ++ Y+ K+K ++D L+++GEPV +DHI +L GLG +YN+ V S+ R + + V ++LL++E RL Q S + +FA + S + R
Subjt: GLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQANFARLQVGSSNNLR
Query: QGSRFPHQSANRDRQTQ-QVQSAGILGKPSS-----SPSNRWPSRTSPNNP----PRILCQICNKYGHTAFVCHHRANLQFQPSFNQNPSPQALFSQFSA
Q +R PHQ + + ++ Q Q + +P + P N P ++ N P R CQ+C K+GHTA C+HR ++ +Q + N P QA FS
Subjt: QGSRFPHQSANRDRQTQ-QVQSAGILGKPSS-----SPSNRWPSRTSPNNP----PRILCQICNKYGHTAFVCHHRANLQFQPSFNQNPSPQALFSQFSA
Query: PNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHTPSISHKLISISK
+ ++ D+W+ D+GATHH++ +LS PY+G ++V +G+G +LPI + G+ SK L+ VLH P +S LIS+SK
Subjt: PNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHTPSISHKLISISK
Query: LCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTD--VWHSRLGHPSSLVLKQILEFYYSSVHA-------
C DN EF+ S+F VKD +TK++LL+G L GLY+ SS SS PRA V +D +WHSRLGHP+ +L + L ++ S +
Subjt: LCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTD--VWHSRLGHPSSLVLKQILEFYYSSVHA-------
Query: ------------------------TYAYLT--------------------------------------CISNYRQFYS----------------------
TYA+ T C + R +
Subjt: ------------------------TYAYLT--------------------------------------CISNYRQFYS----------------------
Query: ----------YIS------------------LSPQPYR-------------------------FTRN-----LPFPFLASLSSSPSPLSHHRPPPPTNTH
YIS SP P+ T N +P PF S ++PSP PP P NTH
Subjt: ----------YIS------------------LSPQPYR-------------------------FTRN-----LPFPFLASLSSSPSPLSHHRPPPPTNTH
Query: PMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----VGCR---------------------------
PM+TR+K GI + + + + EP +Y +A W AM E AL RN TWSLVPPP VGCR
Subjt: PMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP-----VGCR---------------------------
Query: ---------------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSS
QLDV NAFLNGDL EE+ M QP GFV+ YVC L+KA+YGLKQ+PRAWF KL L+ +GF S
Subjt: ---------------------------------PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSS
Query: SKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
S++D+S+F F + DILI+LVYVDDI+ TG+NPTL+S IS L+++F L+DLG LS
Subjt: SKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDLGKLS
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| A0A438G0Q9 Retrovirus-related Pol polyprotein from transposon RE1 | 4.7e-102 | 32.47 | Show/hide |
Query: QPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNRS----------------------
Q ST+ P Y + L VKL +NY+ W++Q+ NV++A G + FI+G+ P + D +NP F W++ +R+
Subjt: QPSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNRS----------------------
Query: --SEVSAL--------------------AIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLS
S +AL + KK +++ Y+ KIK AD L++IGEP+S +D + +L GLGS+YNA VT+I R + +E + ++LL+
Subjt: --SEVSAL--------------------AIKKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLS
Query: YEYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSR----------FPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYG
+E+RLE+QSSI+Q++ AN+A SS+N R G R +P+ + R + G G+ +SSPS + P+ CQ+C K+G
Subjt: YEYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSR----------FPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYG
Query: HTAFVCHHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSI
HTA +C+HR ++ FQ Q +L + N P+ +S P D++WY+DSGA+HH+T +L +L++ PYTG ++V +GNG +L IS+I
Subjt: HTAFVCHHRANLQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSI
Query: GSSYLLSMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSK------
GS L S + L V H P IS LIS++K C +N A +EF+ + F VKDL TK VL +G LE GLYK FSN+ SS+ A+ S+
Subjt: GSSYLLSMSKFPIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSK------
Query: -TTDVWHSRLGHPSSLVLKQIL-----------EFYYSSVHATYAY--------------------------LTCISN-----YRQFYSYISLSPQPYRF
++WH+RLGH S ++ +++ F S T+ Y + C+ + +R F S++ +RF
Subjt: -TTDVWHSRLGHPSSLVLKQIL-----------EFYYSSVHATYAY--------------------------LTCISN-----YRQFYSYISLSPQPYRF
Query: T---------------------------------------------------------RNLPFPF---LASLSSSPSPLSH-----------HRPPPPTN
+ R P P+ S+SS S +SH P T+
Subjt: T---------------------------------------------------------RNLPFPF---LASLSSSPSPLSH-----------HRPPPPTN
Query: THP----------------------------MLTRSKQGIFQPKVWTTLTSLDLSVI---EPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP---
+ P M TRS +GI + K T LDLS I EP++ K+A P+W AME E++AL RN TW LV P
Subjt: THP----------------------------MLTRSKQGIFQPKVWTTLTSLDLSVI---EPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPP---
Query: --VGCR-PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDI
+G QLDV+NAFLNG+L E+++M QPPG+ D+ VC L KA+YGLKQ+PRAWF +LSS L+ WGFS S++DSS+F LI+LVYVDDI
Subjt: --VGCR-PQLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDI
Query: IATGNNPTLLSSLISRLNSQFMLKDLG
+ TG++ T +SSLI++L+S F L+ G
Subjt: IATGNNPTLLSSLISRLNSQFMLKDLG
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| A0A438IYY8 Retrovirus-related Pol polyprotein from transposon RE1 | 3.6e-102 | 29.77 | Show/hide |
Query: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
PS+ + + AL +KL +NY+ W+ Q+ NVV+A G + I G PPQ + + NP+F +W++ +R SS
Subjt: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
Query: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
+ A+ +K LT+ +Y+ K+K +AD L++IGEPV+ +D I +L GLG++YN+ V S+ R + + V ++LL++
Subjt: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
Query: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
E RL Q+S+ + N I AN A Q NN R S+ ++RQ+ G + +N S++S + P CQ+C K+GHT C+HR +
Subjt: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
Query: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
+ FQ NP+ + Q + PN + + Q + + S I D+AW+ D+GATHH++ ++ LS+ PY G +KVIVGNG +L I G+++ S SK
Subjt: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
Query: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVL-LSKTTDVWHSRLGHPS
L VLH P I+ LIS+S+ C DN EF+P F VKD +TK++LL+G+LE GLY+ + F A SS R++ L L+ TT +WHSRLGHP+
Subjt: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVL-LSKTTDVWHSRLGHPS
Query: SLVLKQI--------------------------LEFYYSSVHATY-------------------------------------------------------
+LK I L F S A++
Subjt: SLVLKQI--------------------------LEFYYSSVHATY-------------------------------------------------------
Query: -------AYLTCI-----SNYRQFYSYISLSPQPYRF----------------------------TRNLPFPF--------------------------L
+ + C+ ++ F SY++ +F T +LPF F +
Subjt: -------AYLTCI-----SNYRQFYSYISLSPQPYRF----------------------------TRNLPFPF--------------------------L
Query: ASLSSSPSPLSHHRP--------------------------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSAL
+SL S +P + P P PTN HPM+TR+K GI + KV+ + EPT++ +A+ +W LAME + SAL
Subjt: ASLSSSPSPLSHHRP--------------------------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSAL
Query: RRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEEIH
+RN+TW LVPPP +GC+ QLDV NAFL+GDL E +
Subjt: RRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEEIH
Query: MEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDL
M+QPPGF++S +VC LNKA+YGLKQ+PRAW+ KL++ L+ WGF +S++DSS+F + D+LI+L+YVDDI+ G++ +SS I+RLNS F L+DL
Subjt: MEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLKDL
Query: G
G
Subjt: G
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| A0A438JUQ9 Retrovirus-related Pol polyprotein from transposon RE1 | 7.2e-103 | 31.78 | Show/hide |
Query: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
PS+ + + AL +KL +NY+ W+ Q+ NVV+A G + I G PPQ + + NP+F +W++ +R SS
Subjt: PSTIFPSPMYPNITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYLDNLQQQLNPEFSIWQKCNR----------------------SS
Query: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
+ A+ +K LT+ +Y+ K+K +AD L++IGEPV+ +D I +L GLG++YN+ V S+ R + + V ++LL++
Subjt: EVSALAI----------------------KKDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSY
Query: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
E RL Q+SI + N I AN A Q NN R S+ ++RQ+ G + +N S++S + P CQ+C K+GHT C+HR +
Subjt: EYRLERQSSIDQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRAN
Query: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
+ FQ NP+ + Q + PN + + Q + + S I D+AW+ D+GATHH++ ++ LS+ PY G +KVIVGNG +L I +++ S SK
Subjt: LQFQPSFNQNPSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKF
Query: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVLLSKT-TDVW--------
L VLH P I+ LIS+S+ C DN EF+P FF VKD +TK++LL+G+LE GLY+ + F A SS RA+ L+ D+W
Subjt: PIHLSHVLHTPSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSA---RSSLPRAAVLLSKT-TDVW--------
Query: ------------HSRLG-----HPSSLVLKQILEFYYSSVHATYAYLTCI-----SNYRQFYSYISLSPQPYRF--------------------------
SR H L ++F + + + C+ ++ F SY++ +F
Subjt: ------------HSRLG-----HPSSLVLKQILEFYYSSVHATYAYLTCI-----SNYRQFYSYISLSPQPYRF--------------------------
Query: --TRNLP----------FPFLASLSSSPSPLSHHRP-------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELS
T +LP FPF ++ S S ++ P PP ++ M+TR+K GI + KV+ + EPT++ +A+ +W LAME E S
Subjt: --TRNLP----------FPFLASLSSSPSPLSHHRP-------PPPTNTHPMLTRSKQGIFQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELS
Query: ALRRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEE
AL+RN+TW LVPPP +GC+ QLDV NAFL+GDL E
Subjt: ALRRNDTWSLVPPP-----VGCR------------------------------------------------------------PQLDVNNAFLNGDLTEE
Query: IHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLK
+ M+QPPGF++S +VC LNKA+YGLKQ+PRAW+ KLS+ L+ WGF +S++DSS+F + D+LI+L+YVDDI+ TG++ +SS I+RLNS F L+
Subjt: IHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTLLSSLISRLNSQFMLK
Query: DLG
DLG
Subjt: DLG
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.4e-15 | 39.02 | Show/hide |
Query: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRS--DDILIILVYVDDIIATGNN
Q+DV AFLNG L EEI+M P G S NS VC LNKAIYGLKQ+ R WF L F +S D I+ + ++ + +L+YVDD++ +
Subjt: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRS--DDILIILVYVDDIIATGNN
Query: PTLLSSLISRLNSQFMLKDLGKL
T +++ L +F + DL ++
Subjt: PTLLSSLISRLNSQFMLKDLGKL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.2e-23 | 45.83 | Show/hide |
Query: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSD-DILIILVYVDDIIATGNNP
QLDV AFL+GDL EEI+MEQP GF + VC LNK++YGLKQ+PR W+MK S + S + + SD +++ R S+ + +I+L+YVDD++ G +
Subjt: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSD-DILIILVYVDDIIATGNNP
Query: TLLSSLISRLNSQFMLKDLG
L++ L L+ F +KDLG
Subjt: TLLSSLISRLNSQFMLKDLG
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| P25600 Putative transposon Ty5-1 protein YCL074W | 9.9e-17 | 35.83 | Show/hide |
Query: LDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTL
+DV+ AFLN + E I+++QPPGFV+ N YV L +YGLKQ+P W +++ L GF + + +++ SD + I VYVDD++ +P +
Subjt: LDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPTL
Query: LSSLISRLNSQFMLKDLGKL
+ L + +KDLGK+
Subjt: LSSLISRLNSQFMLKDLGKL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.5e-41 | 26.63 | Show/hide |
Query: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYL-DNLQQQLNPEFSIWQKCNR---SSEVSALAIK---------------------
N+ + KLT +NYL W Q+ + Y L GF++GS PP + + ++NP+++ W++ ++ S+ + A+++
Subjt: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYL-DNLQQQLNPEFSIWQKCNR---SSEVSALAIK---------------------
Query: --------------------KDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSI
K T+ Y+ + D+L+ +G+P+ + + +LE L EY + I + P + ++ LL++E ++ SS
Subjt: --------------------KDGLTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSI
Query: DQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRANLQFQPSFNQN
+ + ++NN G+R ++ NR+ KP S + + + P CQIC GH+A C + + Q
Subjt: DQLNTIQANFARLQVGSSNNLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRILCQICNKYGHTAFVCHHRANLQFQPSFNQN
Query: PSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHT
PSP F+ P + L S + W +DSGATHH+T D N+LS PYTG + V+V +G +PIS GS+ L + S+ P++L ++L+
Subjt: PSPQALFSQFSAPNPSPSSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHT
Query: PSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTDVWHSRLGHPSSLVLKQILEFYYSS
P+I LIS+ +LC N SVEF+P+ F VKDL T LL+G + LY+ + S + + P + T WH+RLGHP+ +L ++ Y S
Subjt: PSISHKLISISKLCYDNKASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTDVWHSRLGHPSSLVLKQILEFYYSS
Query: V-HATYAYLTCISNYRQFYSYISLSPQPYRFTRNLPFPFLASLSSSPSPLSH
V + ++ +L+C + + S TR L + + + + SSP LSH
Subjt: V-HATYAYLTCISNYRQFYSYISLSPQPYRFTRNLPFPFLASLSSSPSPLSH
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.1e-31 | 53.85 | Show/hide |
Query: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPT
QLDVNNAFL G LT++++M QPPGF+D YVC L KA+YGLKQ+PRAW+++L + L++ GF +S SD+S+F +R I+ +LVYVDDI+ TGN+PT
Subjt: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPT
Query: LLSSLISRLNSQFMLKD
LL + + L+ +F +KD
Subjt: LLSSLISRLNSQFMLKD
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.9e-40 | 28.54 | Show/hide |
Query: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYL-DNLQQQLNPEFSIWQKCNR---SSEVSALAIK-----KDGLTVTQYLAKIKDV
N+ + KLT +NYL W Q+ + Y L GF++GS P PP + + ++NP+++ W++ ++ S+ + A+++ T Q ++ +
Subjt: NITQALSVKLTDSNYLPWKNQLLNVVYAYGLKGFINGSIPPPPQYL-DNLQQQLNPEFSIWQKCNR---SSEVSALAIK-----KDGLTVTQYLAKIKDV
Query: -----------------ADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQANFARLQVGSSN
D+L+ +G+P+ + + +LE L +Y + I + P + ++ L++ E +L +S + + I AN + ++
Subjt: -----------------ADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLERQSSIDQLNTIQANFARLQVGSSN
Query: NLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRIL--CQICNKYGHTAFVCHHRANLQFQPSFNQNPSPQALFSQFSAPNPSP
N Q +R +++ N + +PSSS SR+ P L CQIC+ GH+A C QFQ + NQ S S F+ P
Subjt: NLRQGSRFPHQSANRDRQTQQVQSAGILGKPSSSPSNRWPSRTSPNNPPRIL--CQICNKYGHTAFVCHHRANLQFQPSFNQNPSPQALFSQFSAPNPSP
Query: SSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHTPSISHKLISISKLCYDN
+ L +S + W +DSGATHH+T D N+LS PYTG + V++ +G +PI+ GS+ L + S+ + L+ VL+ P+I LIS+ +LC N
Subjt: SSDSSQPTLPTSSFIPDDAWYMDSGATHHVTPDLNSLSNPLPYTGIEKVIVGNGMNLPISSIGSSYLLSMSKFPIHLSHVLHTPSISHKLISISKLCYDN
Query: KASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTDVWHSRLGHPSSLVLKQILEFYYSSV-HATYAYLTC
+ SVEF+P+ F VKDL T LL+G + LY+ + S + + P + T WHSRLGHPS +L ++ + V + ++ L+C
Subjt: KASVEFYPSFFLVKDLITKRVLLRGNLEGGLYKLSSSFSNMSARSSLPRAAVLLSKTTDVWHSRLGHPSSLVLKQILEFYYSSV-HATYAYLTC
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.0e-30 | 53.85 | Show/hide |
Query: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPT
QLDVNNAFL G LT+E++M QPPGFVD YVC L KAIYGLKQ+PRAW+++L + L++ GF +S SD+S+F +R I+ +LVYVDDI+ TGN+
Subjt: QLDVNNAFLNGDLTEEIHMEQPPGFVDSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATGNNPT
Query: LLSSLISRLNSQFMLKD
LL + L+ +F +K+
Subjt: LLSSLISRLNSQFMLKD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 8.1e-06 | 31.51 | Show/hide |
Query: LTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLER
+ V Y K+K +AD L ++ PV+ ++ + Y+L GL +++ + I+HR P +D +L E RL+R
Subjt: LTVTQYLAKIKDVADKLSSIGEPVSLKDHISYILEGLGSEYNAFVTSIQHRVELPPIEDVRALLLSYEYRLER
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| AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | 2.4e-26 | 50.4 | Show/hide |
Query: QLDVNNAFLNGDLTEEIHMEQPPGFV----DSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATG
QLD++NAFLNGDL EEI+M+ PPG+ DS VC+L K+IYGLKQ+ R WF+K S L+ +GF S SD + F + L +LVYVDDII
Subjt: QLDVNNAFLNGDLTEEIHMEQPPGFV----DSANSRYVCHLNKAIYGLKQSPRAWFMKLSSCLVSWGFSSSKSDSSIFYFRRSDDILIILVYVDDIIATG
Query: NNPTLLSSLISRLNSQFMLKDLGKL
NN + L S+L S F L+DLG L
Subjt: NNPTLLSSLISRLNSQFMLKDLGKL
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| ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase) | 6.6e-08 | 50 | Show/hide |
Query: MLTRSKQGI--FQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPPV-----GCR
MLTRSK GI PK T+T+ EP S AL P W AM+ EL AL RN TW LVPPPV GC+
Subjt: MLTRSKQGI--FQPKVWTTLTSLDLSVIEPTSYKRALTCPDWRLAMESELSALRRNDTWSLVPPPV-----GCR
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