; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001178 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001178
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:26084832..26085233
RNA-Seq ExpressionLag0001178
SyntenyLag0001178
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]2.9e-4566.14Show/hide
Query:  MFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCD
        + + YL  G LP EKIEA+++Q+RA+ +VL++  LYKRGYS+ LL+CL+  +A+YVMREIHEGVCG+HSGARSL HKI+RQGYYWPTML D + FT+ CD
Subjt:  MFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCD

Query:  QCQRFALVPRQPAVPLTNIISLWPFVQ
        +CQRFA VPRQP  PLT+I+SLWPF Q
Subjt:  QCQRFALVPRQPAVPLTNIISLWPFVQ

XP_022158215.1 uncharacterized protein LOC111024751 [Momordica charantia]5.2e-3957.36Show/hide
Query:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS
        MD   D+L  G +PA+  +A+K++R+A++++++EGKL+KRGYS+ LLRCL   +A YVMREIHEGVCGNH GARS+  K+VRQGYYWPT+ +D + F ++
Subjt:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS

Query:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ
        CD+CQRFA + RQP   LT I S WPF Q
Subjt:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]1.2e-4366.4Show/hide
Query:  LDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCDQC
        + YL  G LP EKIEA+++QRRA+ +VL++  LYK GYS+ LL+CL+  +A+YVMREIHEGVCG+HSGARSL HKI+RQGYYWPTML D + FT+ CD+C
Subjt:  LDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCDQC

Query:  QRFALVPRQPAVPLTNIISLWPFVQ
        QRFA VPRQP  PLT+I+S WPF Q
Subjt:  QRFALVPRQPAVPLTNIISLWPFVQ

XP_024047975.1 uncharacterized protein LOC18053628 [Citrus clementina]1.8e-3958.14Show/hide
Query:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS
        M+    YL  GELPA+K EA+KV+ RA+ +++ +G+LYKRG+S+ LL+CL+ +DANYV+REIHEG+CGNHSG R L +K +RQGY+WPTM +DA   T+ 
Subjt:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS

Query:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ
        CD+CQRFA +PRQP   L N++S WPF Q
Subjt:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ

XP_030928927.1 uncharacterized protein LOC115955035 [Quercus lobata]1.5e-3858.91Show/hide
Query:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS
        M   + YL  G LP EK EA+KV+ R++ +VL  G LYKRG+S   LRCL+  DANYV+RE+HEG CGNHSGARSL HK+VR GYYWP M  DA+ + + 
Subjt:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS

Query:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ
        CDQCQRF+ VPRQP+  LT +++ WPF Q
Subjt:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ

TrEMBL top hitse value%identityAlignment
A0A2N9GRZ2 Ribonuclease H8.2e-3856.92Show/hide
Query:  DMFLDYLG--KGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTR
        D FL+ LG  KG LP +K+EA+K++ RAS+F L +G LYK G+S   LRCLS  +ANYV+RE+HEG+CGNHSGAR+L HK+ R GYYWP++L DA  + +
Subjt:  DMFLDYLG--KGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTR

Query:  SCDQCQRFALVPRQPAVPLTNIISLWPFVQ
        +CD+CQRFA +PR P   +T + S WPF Q
Subjt:  SCDQCQRFALVPRQPAVPLTNIISLWPFVQ

A0A6J1DJC7 Ribonuclease H1.4e-4566.14Show/hide
Query:  MFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCD
        + + YL  G LP EKIEA+++Q+RA+ +VL++  LYKRGYS+ LL+CL+  +A+YVMREIHEGVCG+HSGARSL HKI+RQGYYWPTML D + FT+ CD
Subjt:  MFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCD

Query:  QCQRFALVPRQPAVPLTNIISLWPFVQ
        +CQRFA VPRQP  PLT+I+SLWPF Q
Subjt:  QCQRFALVPRQPAVPLTNIISLWPFVQ

A0A6J1DV78 Ribonuclease H2.5e-3957.36Show/hide
Query:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS
        MD   D+L  G +PA+  +A+K++R+A++++++EGKL+KRGYS+ LLRCL   +A YVMREIHEGVCGNH GARS+  K+VRQGYYWPT+ +D + F ++
Subjt:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS

Query:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ
        CD+CQRFA + RQP   LT I S WPF Q
Subjt:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ

A0A6J1DWM2 Ribonuclease H1.4e-3755.81Show/hide
Query:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS
        MD   D+L  G +PA+  +A+K++R+A++++++EGKL+KRGYS+ LLRCL   +A YVMREIHEGVCGNH GA+S+  K+VRQGYYW T+ +D + F ++
Subjt:  MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRS

Query:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ
        CD+CQRFA + RQP   LT I S WPF Q
Subjt:  CDQCQRFALVPRQPAVPLTNIISLWPFVQ

A0A6J1DZU0 Ribonuclease H5.8e-4466.4Show/hide
Query:  LDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCDQC
        + YL  G LP EKIEA+++QRRA+ +VL++  LYK GYS+ LL+CL+  +A+YVMREIHEGVCG+HSGARSL HKI+RQGYYWPTML D + FT+ CD+C
Subjt:  LDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCDQC

Query:  QRFALVPRQPAVPLTNIISLWPFVQ
        QRFA VPRQP  PLT+I+S WPF Q
Subjt:  QRFALVPRQPAVPLTNIISLWPFVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGTTCCTTGACTACTTAGGGAAAGGTGAGCTGCCAGCAGAAAAGATAGAGGCTAAAAAAGTTCAGAGGCGAGCATCGTATTTCGTCTTAAGGGAAGGGAAACT
ATACAAAAGAGGCTACTCGATGTCATTGCTGAGATGTCTTTCCTCAAGCGATGCTAACTACGTAATGAGAGAGATACATGAGGGGGTGTGTGGAAATCATTCTGGAGCGA
GGTCACTGTGTCACAAGATAGTCAGGCAAGGTTACTACTGGCCAACAATGTTGCAGGATGCTAGACATTTCACGAGATCTTGCGATCAATGCCAAAGGTTTGCACTTGTT
CCTAGACAACCAGCTGTGCCTTTAACGAACATTATCAGCCTTTGGCCGTTCGTGCAGAAGCAGAACCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATGTTCCTTGACTACTTAGGGAAAGGTGAGCTGCCAGCAGAAAAGATAGAGGCTAAAAAAGTTCAGAGGCGAGCATCGTATTTCGTCTTAAGGGAAGGGAAACT
ATACAAAAGAGGCTACTCGATGTCATTGCTGAGATGTCTTTCCTCAAGCGATGCTAACTACGTAATGAGAGAGATACATGAGGGGGTGTGTGGAAATCATTCTGGAGCGA
GGTCACTGTGTCACAAGATAGTCAGGCAAGGTTACTACTGGCCAACAATGTTGCAGGATGCTAGACATTTCACGAGATCTTGCGATCAATGCCAAAGGTTTGCACTTGTT
CCTAGACAACCAGCTGTGCCTTTAACGAACATTATCAGCCTTTGGCCGTTCGTGCAGAAGCAGAACCGCTAG
Protein sequenceShow/hide protein sequence
MDMFLDYLGKGELPAEKIEAKKVQRRASYFVLREGKLYKRGYSMSLLRCLSSSDANYVMREIHEGVCGNHSGARSLCHKIVRQGYYWPTMLQDARHFTRSCDQCQRFALV
PRQPAVPLTNIISLWPFVQKQNR