; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001196 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001196
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr4:26456056..26456816
RNA-Seq ExpressionLag0001196
SyntenyLag0001196
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8735657.1 hypothetical protein F3Y22_tig00000340pilonHSYRG01097 [Hibiscus syriacus]5.4e-0840.62Show/hide
Query:  ETYSHFLLPLNGHDLW-PKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKG------PVKKRSRTSST
        E YSHF+ P+ G + W   TTYE ++PL IRRPP RP+K+R+++ +E   S   M +K     C +   P HN R CKG      P ++R+ T  T
Subjt:  ETYSHFLLPLNGHDLW-PKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKG------PVKKRSRTSST

KAF7840310.1 hypothetical protein G2W53_002608 [Senna tora]7.0e-0835.16Show/hide
Query:  KKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPR--KFRCDRGRLPRHNSRFCKGPVKKRSRTS
        K+  +  Y  ++ P NG  +WP+   +P++P  ++RPP RP+KQRK++ +E    +    R  + RC + +L  HN R CKGP  K+++ S
Subjt:  KKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPR--KFRCDRGRLPRHNSRFCKGPVKKRSRTS

RHN71616.1 putative transcription factor interactor and regulator CCHC(Zn) family [Medicago truncatula]8.3e-0940Show/hide
Query:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK----FRCDRGRLPRHNSRFCKG
        +K+  ++TY +F++P NG  LWP+    PILP  +RR P RP+K R++D+DE  ++++K  ++     RC R +   HN R CKG
Subjt:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK----FRCDRGRLPRHNSRFCKG

XP_028064760.1 uncharacterized protein LOC114267884 [Camellia sinensis]2.2e-0937.18Show/hide
Query:  LHVAMTLRQKKKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKGPVK---
        +HVA      KK+  + TY   + PLNG + WPKT  EP+LP  ++RP  RP+KQR RD DE   +  K+ RK    +C +  +  HN R CKGPVK   
Subjt:  LHVAMTLRQKKKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKGPVK---

Query:  -------KRSRTSSTFMGFSIPCEHIGTQESAARTSSTPHGTPSASGTAYTATASA
               K  RT  TFMGF             A T       P  + T  T+T +A
Subjt:  -------KRSRTSSTFMGFSIPCEHIGTQESAARTSSTPHGTPSASGTAYTATASA

XP_028112221.1 uncharacterized protein LOC114310445 [Camellia sinensis]6.4e-0940Show/hide
Query:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKGPVKKRS------RTSS
        KK+  + TY   + P+NG DLWPKT  +P+LP  ++RP  RP K R RD DE   +  K+ R+    +C +     HN R CK P+K ++        +S
Subjt:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKGPVKKRS------RTSS

Query:  TFMGF
        TFMGF
Subjt:  TFMGF

TrEMBL top hitse value%identityAlignment
A0A151SBM5 SWIM-type domain-containing protein2.2e-0744.05Show/hide
Query:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKG
        +K   + TYSH  +P NG +LWP    EPI P ++RR P RP+KQRKR  DE   +  K+PR+    +C +     HN R CKG
Subjt:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKG

A0A2Z6NTI8 SWIM-type domain-containing protein1.1e-0640.48Show/hide
Query:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRKF---RCDRGRLPRHNSRFCKG
        +K   + TYSH +LP NG  +WP T  + I P ++RR P RP+KQR + +DE   + T +PR      C + + P HN   CKG
Subjt:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRKF---RCDRGRLPRHNSRFCKG

A0A396J0S1 Putative transcription factor interactor and regulator CCHC(Zn) family4.0e-0940Show/hide
Query:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK----FRCDRGRLPRHNSRFCKG
        +K+  ++TY +F++P NG  LWP+    PILP  +RR P RP+K R++D+DE  ++++K  ++     RC R +   HN R CKG
Subjt:  KKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK----FRCDRGRLPRHNSRFCKG

A0A6A3BTX6 SWIM-type domain-containing protein2.9e-0738Show/hide
Query:  ETYSHFLLPLNGHDLW-PKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKGPV----KKRSRTSSTFMGFSI
        E YSHF+ P+ G + W   TT EP++P  IRRPP RP+K+R+++  E   S   M +K     C +   P HN R CKG V    K  ++  +   G++I
Subjt:  ETYSHFLLPLNGHDLW-PKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKGPV----KKRSRTSSTFMGFSI

A0A6A3D4R8 Uncharacterized protein2.6e-0840.62Show/hide
Query:  ETYSHFLLPLNGHDLW-PKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKG------PVKKRSRTSST
        E YSHF+ P+ G + W   TTYE ++PL IRRPP RP+K+R+++ +E   S   M +K     C +   P HN R CKG      P ++R+ T  T
Subjt:  ETYSHFLLPLNGHDLW-PKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRK---FRCDRGRLPRHNSRFCKG------PVKKRSRTSST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGTGGCGACTCCAAACCTCTCACCTCGAAAGAGACCCTTAGGAAAGGACGTCGGTCGCTCCACGTCGCGATGACGTTGCGACAGAAAAAAAAAAAAGCACTCAT
GGAAACCTACTCCCATTTTCTTCTACCTTTGAATGGTCATGACCTTTGGCCAAAGACGACATATGAGCCCATTCTCCCACTAGTTATCCGAAGACCACCTTGTCGACCAA
GAAAACAGAGGAAACGAGATGATGATGAAGCTGGGACTTCAAGTACCAAAATGCCTAGAAAGTTTAGATGCGATAGAGGTAGGTTGCCCAGACACAACTCTAGATTTTGC
AAAGGTCCAGTGAAGAAGAGATCAAGGACAAGTTCTACATTCATGGGGTTTAGTATTCCATGTGAACATATTGGAACACAAGAGTCTGCTGCTAGAACTTCATCTACTCC
ACACGGGACTCCATCTGCTTCTGGGACTGCTTATACTGCAACTGCATCTGCTGCAGAGGCTTCATATGCTGCTGGGACTCCTTATGCTTCTGGACATCCATCTGCTGCTT
CAACTCCAAGTGCTGCCGAGACTCCATCTGCTGCTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGTGGCGACTCCAAACCTCTCACCTCGAAAGAGACCCTTAGGAAAGGACGTCGGTCGCTCCACGTCGCGATGACGTTGCGACAGAAAAAAAAAAAAGCACTCAT
GGAAACCTACTCCCATTTTCTTCTACCTTTGAATGGTCATGACCTTTGGCCAAAGACGACATATGAGCCCATTCTCCCACTAGTTATCCGAAGACCACCTTGTCGACCAA
GAAAACAGAGGAAACGAGATGATGATGAAGCTGGGACTTCAAGTACCAAAATGCCTAGAAAGTTTAGATGCGATAGAGGTAGGTTGCCCAGACACAACTCTAGATTTTGC
AAAGGTCCAGTGAAGAAGAGATCAAGGACAAGTTCTACATTCATGGGGTTTAGTATTCCATGTGAACATATTGGAACACAAGAGTCTGCTGCTAGAACTTCATCTACTCC
ACACGGGACTCCATCTGCTTCTGGGACTGCTTATACTGCAACTGCATCTGCTGCAGAGGCTTCATATGCTGCTGGGACTCCTTATGCTTCTGGACATCCATCTGCTGCTT
CAACTCCAAGTGCTGCCGAGACTCCATCTGCTGCTGGCTGA
Protein sequenceShow/hide protein sequence
MIGGDSKPLTSKETLRKGRRSLHVAMTLRQKKKKALMETYSHFLLPLNGHDLWPKTTYEPILPLVIRRPPCRPRKQRKRDDDEAGTSSTKMPRKFRCDRGRLPRHNSRFC
KGPVKKRSRTSSTFMGFSIPCEHIGTQESAARTSSTPHGTPSASGTAYTATASAAEASYAAGTPYASGHPSAASTPSAAETPSAAG