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Lag0001211 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001211
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:26654591..26655232
RNA-Seq ExpressionLag0001211
SyntenyLag0001211
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG73320.1 hypothetical protein EZV62_001899 [Acer yangbiense]1.3e-1035.48Show/hide
Query:  GIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFN
        G+GL++RD  G + A+ A G+ +   P   EA+ +L G+  A E  +  L V SD+  ++  IN +I   S I  +I+DIRD M+     S SF+    N
Subjt:  GIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFN

Query:  FFAHKLTRDGLSSLQPILWLGNYP
          AH L +  L ++   LWL +YP
Subjt:  FFAHKLTRDGLSSLQPILWLGNYP

XP_018821989.1 uncharacterized protein LOC108992010 [Juglans regia]3.7e-1031.88Show/hide
Query:  LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL
        LNVD +F  +    GIG VLRD  G +    A+      +  E E +A+LRGLQ    L +  L++ SDS +++   +   Q  + + +VI ++R  M  
Subjt:  LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL

Query:  FEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYP
        F+    + ++   N   H L + GLS  +  LW G+YP
Subjt:  FEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYP

XP_023893303.1 uncharacterized protein LOC112005292 [Quercus suber]7.4e-1131.88Show/hide
Query:  LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL
        +N D +    E   GIG+V+RD  G++  + +  IS   SPLE EAMAV   +QFA +L    + + +DS VL+K ++++ +  S +  V+ +IR  + L
Subjt:  LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL

Query:  FEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYP
        F  + +S +  + N  AHKL    +     ++W+ + P
Subjt:  FEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYP

XP_023905503.1 uncharacterized protein LOC112017269 [Quercus suber]1.6e-1028.96Show/hide
Query:  EWVVEYIRDFCQANPKGGALLQFEDDVKRIIAGREETI----LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQE
        +W V+Y+ +F  AN     L  F++ V+ +       I     NVD +      + G+G+++RD  G   A     I     PLE EA AV  GLQFA++
Subjt:  EWVVEYIRDFCQANPKGGALLQFEDDVKRIIAGREETI----LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQE

Query:  LEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPNWM
        L +  L + SDS ++ + +N     P  I +VI  I  +   F  V FS +    N  +H L +  +  +   LW+   P ++
Subjt:  LEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPNWM

XP_042988698.1 uncharacterized protein LOC122316231 [Carya illinoinensis]6.3e-1034.51Show/hide
Query:  LNVDASFKGNERTRGIGLVLRDRMG--ILKAT-QAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDS
        LNVD +F  N    G G ++RD  G  I+ AT + V I +    +E EA+A+LRGLQF   L +  L + SDS ++++  N +    +   +VI + ++ 
Subjt:  LNVDASFKGNERTRGIGLVLRDRMG--ILKAT-QAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDS

Query:  MKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPN
        M  F       +S  +N  AH L + GLS     LW G YP+
Subjt:  MKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPN

TrEMBL top hitse value%identityAlignment
A0A2I4ERH4 uncharacterized protein LOC1089920101.8e-1031.88Show/hide
Query:  LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL
        LNVD +F  +    GIG VLRD  G +    A+      +  E E +A+LRGLQ    L +  L++ SDS +++   +   Q  + + +VI ++R  M  
Subjt:  LNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL

Query:  FEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYP
        F+    + ++   N   H L + GLS  +  LW G+YP
Subjt:  FEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYP

A0A2N9HA90 RNase H domain-containing protein3.4e-0928.34Show/hide
Query:  IPNVVTRCEWVVEYIRDFCQANPKG--GALLQFEDDVKRIIAGREETILNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRG
        +PNV   C        DF ++  KG  G       D +     +    LNV      N    G+G+++RD +G + A+    I  C   L+T A   L  
Subjt:  IPNVVTRCEWVVEYIRDFCQANPKG--GALLQFEDDVKRIIAGREETILNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRG

Query:  LQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPN
        ++FA ++ + +L V    + L+K I +   C + I  +I D+     +F+ +SFSFI    N  A  L  + LSS    +WL ++PN
Subjt:  LQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPN

A0A2N9I509 Uncharacterized protein3.4e-0928.34Show/hide
Query:  IPNVVTRCEWVVEYIRDFCQANPKG--GALLQFEDDVKRIIAGREETILNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRG
        +PNV   C        DF ++  KG  G       D +     +    LNV      N    G+G+++RD +G + A+    I  C   L+T A   L  
Subjt:  IPNVVTRCEWVVEYIRDFCQANPKG--GALLQFEDDVKRIIAGREETILNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRG

Query:  LQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPN
        ++FA ++ + +L V    + L+K I +   C + I  +I D+     +F+ +SFSFI    N  A  L  + LSS    +WL ++PN
Subjt:  LQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPN

A0A5C7IVJ7 RNase H domain-containing protein6.1e-1135.48Show/hide
Query:  GIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFN
        G+GL++RD  G + A+ A G+ +   P   EA+ +L G+  A E  +  L V SD+  ++  IN +I   S I  +I+DIRD M+     S SF+    N
Subjt:  GIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFN

Query:  FFAHKLTRDGLSSLQPILWLGNYP
          AH L +  L ++   LWL +YP
Subjt:  FFAHKLTRDGLSSLQPILWLGNYP

A0A7J9ICH6 RNase H domain-containing protein3.4e-0930.5Show/hide
Query:  ILNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMK
        I+  DA+F         GLV+RD+ G++KA++++  S  S P   EA A L   +   E+ +  +T++ DS ++I      +   S I ++I DI+ S  
Subjt:  ILNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMK

Query:  LFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPNW
         F+ + F FI    N  AHKL +D L   + +  +G   N+
Subjt:  LFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPNW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein9.3e-0429.91Show/hide
Query:  VDASFKGNERTRGIGLVLRDRMGILK--ATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL
        VDA+++      G G V +      K   T + G     SPL  EA A+   +  A +LE   L VLSDS  ++  +N  +     I  ++ +IR     
Subjt:  VDASFKGNERTRGIGLVLRDRMGILK--ATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKL

Query:  FEAVSFSFISTKFNFFA
        F ++SF FI    N  A
Subjt:  FEAVSFSFISTKFNFFA

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0632Show/hide
Query:  DASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSC-IASVIWDIRDSMKLFE
        DA++K   +  G G V+R+   +              PL  EA+A+   LQ+AQ + + +L++ SDS  LI  I  E   PS     +I+DI +    F 
Subjt:  DASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQELEVCRLTVLSDSSVLIKTINEEIQCPSC-IASVIWDIRDSMKLFE

Query:  AVSFSFISTKFNFFAHKLTRDGLSS
         VSFSF+    N  A +L +  L S
Subjt:  AVSFSFISTKFNFFAHKLTRDGLSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCATAATCGACCAATTCCTAATGTTGTGACCCGTTGTGAATGGGTGGTCGAATATATAAGAGACTTTTGTCAAGCCAATCCGAAGGGGGGAGCTCTGCTACAATT
TGAAGATGATGTTAAAAGAATTATAGCAGGTCGTGAGGAAACCATATTAAATGTCGATGCATCGTTCAAGGGTAACGAAAGGACACGTGGTATTGGTTTAGTCCTGCGTG
ACAGAATGGGTATTCTAAAGGCTACTCAGGCAGTAGGGATTTCAGTTTGTTCTTCTCCGTTGGAAACAGAAGCGATGGCGGTGCTTCGTGGTCTTCAGTTTGCTCAGGAG
TTGGAGGTTTGTCGTTTAACCGTTCTGTCGGATTCGTCAGTTTTAATCAAAACTATTAACGAGGAGATCCAGTGTCCTTCCTGCATTGCTTCAGTAATCTGGGACATTCG
GGATTCCATGAAACTCTTCGAGGCGGTTAGTTTTTCGTTCATTAGCACAAAGTTTAATTTTTTTGCTCATAAATTGACCCGTGATGGTCTTTCTTCTCTACAGCCAATTT
TGTGGCTAGGAAACTATCCGAATTGGATGGTTAGTTTATCGCATAAAGAGCGATATATGTTTGTGTCCTATGGGGATAATGTCCCGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCATAATCGACCAATTCCTAATGTTGTGACCCGTTGTGAATGGGTGGTCGAATATATAAGAGACTTTTGTCAAGCCAATCCGAAGGGGGGAGCTCTGCTACAATT
TGAAGATGATGTTAAAAGAATTATAGCAGGTCGTGAGGAAACCATATTAAATGTCGATGCATCGTTCAAGGGTAACGAAAGGACACGTGGTATTGGTTTAGTCCTGCGTG
ACAGAATGGGTATTCTAAAGGCTACTCAGGCAGTAGGGATTTCAGTTTGTTCTTCTCCGTTGGAAACAGAAGCGATGGCGGTGCTTCGTGGTCTTCAGTTTGCTCAGGAG
TTGGAGGTTTGTCGTTTAACCGTTCTGTCGGATTCGTCAGTTTTAATCAAAACTATTAACGAGGAGATCCAGTGTCCTTCCTGCATTGCTTCAGTAATCTGGGACATTCG
GGATTCCATGAAACTCTTCGAGGCGGTTAGTTTTTCGTTCATTAGCACAAAGTTTAATTTTTTTGCTCATAAATTGACCCGTGATGGTCTTTCTTCTCTACAGCCAATTT
TGTGGCTAGGAAACTATCCGAATTGGATGGTTAGTTTATCGCATAAAGAGCGATATATGTTTGTGTCCTATGGGGATAATGTCCCGTTTTAA
Protein sequenceShow/hide protein sequence
MVHNRPIPNVVTRCEWVVEYIRDFCQANPKGGALLQFEDDVKRIIAGREETILNVDASFKGNERTRGIGLVLRDRMGILKATQAVGISVCSSPLETEAMAVLRGLQFAQE
LEVCRLTVLSDSSVLIKTINEEIQCPSCIASVIWDIRDSMKLFEAVSFSFISTKFNFFAHKLTRDGLSSLQPILWLGNYPNWMVSLSHKERYMFVSYGDNVPF