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Lag0001214 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001214
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr4:26704382..26705022
RNA-Seq ExpressionLag0001214
SyntenyLag0001214
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032859.1 retrotransposon protein [Cucumis melo var. makuwa]9.3e-2956.64Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP
        M  +++  +H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+               FGWN+E KCIVA KE++D WV+SH AAKGLLNKP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP

Query:  FPHYEELTIVFGK
        FP+Y+ELT VFG+
Subjt:  FPHYEELTIVFGK
KAA0035563.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2959.81Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI----------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYE
        M  +++ P+H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+          FGWN+E KCIVA KE++D WV+SH AAKGLLNK FP+Y+
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI----------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYE

Query:  ELTIVFG
        ELT VFG
Subjt:  ELTIVFG
KAA0035912.1 retrotransposon protein [Cucumis melo var. makuwa]7.1e-2956.76Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP
        M  +++ P+H+WT+ EE  LVE L+ELV  G W+ DNGTFRPGY AQL+               FGWN+E KCIVA KE++D WV+SH AAKGLLNKPFP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP

Query:  HYEELTIVFGK
        +Y+ELT VFG+
Subjt:  HYEELTIVFGK
KAA0056563.1 retrotransposon protein [Cucumis melo var. makuwa]9.3e-2956.76Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP
        M  +++ P+H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL+               F WN+E KCIVA KE++D WV+SH AAKGLLNKPFP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP

Query:  HYEELTIVFGK
        +Y+ELT VFG+
Subjt:  HYEELTIVFGK
TYK16368.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-2854.87Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP
        M  +++ P+H+ T+ EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+               FGWN+E KCI+A KE++D WV+SH AAKGLLNKP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP

Query:  FPHYEELTIVFGK
        FP+Y+ELT VFG+
Subjt:  FPHYEELTIVFGK
TrEMBL top hitse value%identityAlignment
A0A5A7SUL5 Retrotransposon protein4.5e-2956.64Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP
        M  +++  +H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+               FGWN+E KCIVA KE++D WV+SH AAKGLLNKP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP

Query:  FPHYEELTIVFGK
        FP+Y+ELT VFG+
Subjt:  FPHYEELTIVFGK
A0A5A7SXI6 Retrotransposon protein3.5e-2956.76Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP
        M  +++ P+H+WT+ EE  LVE L+ELV  G W+ DNGTFRPGY AQL+               FGWN+E KCIVA KE++D WV+SH AAKGLLNKPFP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP

Query:  HYEELTIVFGK
        +Y+ELT VFG+
Subjt:  HYEELTIVFGK
A0A5A7SYB2 Retrotransposon protein1.2e-2959.81Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI----------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYE
        M  +++ P+H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+          FGWN+E KCIVA KE++D WV+SH AAKGLLNK FP+Y+
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI----------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYE

Query:  ELTIVFG
        ELT VFG
Subjt:  ELTIVFG
A0A5A7UL03 Retrotransposon protein4.5e-2956.76Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP
        M  +++ P+H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL+               F WN+E KCIVA KE++D WV+SH AAKGLLNKPFP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI-------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFP

Query:  HYEELTIVFGK
        +Y+ELT VFG+
Subjt:  HYEELTIVFGK
A0A5D3CYL4 Retrotransposon protein2.9e-2854.87Show/hide
Query:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP
        M  +++ P+H+ T+ EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+               FGWN+E KCI+A KE++D WV+SH AAKGLLNKP
Subjt:  MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI---------------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKP

Query:  FPHYEELTIVFGK
        FP+Y+ELT VFG+
Subjt:  FPHYEELTIVFGK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein3.4e-0528Show/hide
Query:  FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGKIGL
        F W+ E + + A+  V+ +++K+H  A+  + +P P+Y++L ++ G  G+
Subjt:  FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGKIGL
AT4G02210.2 unknown protein3.4e-0528Show/hide
Query:  FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGKIGL
        F W+ E + + A+  V+ +++K+H  A+  + +P P+Y++L ++ G  G+
Subjt:  FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGKIGL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGAGGAGGCAAAGTTGGTTGAAAGCCTCGTGGAGCTTGTACATGATGGTAGATGGCGAGGTGATAA
TGGAACGTTCAGACCTGGCTACCATGCACAACTGCAGCGTATATTCGGGTGGAACGAAGAGTATAAGTGCATTGTGGCGAATAAAGAAGTCTACGATGAGTGGGTGAAGT
CCCACTCAGCTGCAAAGGGTCTACTGAACAAGCCATTTCCTCATTACGAGGAACTCACCATCGTGTTCGGCAAAATCGGGCTAGTGGATCGAGGTGTGATGTCCCAGCGG
AATAAGCTGAAGAAAGCCCCTCAGTGGACTTGGAGGGGGATTCCAACTTCCAGGGACATAGGATTATTATATCCCCATCCCTCCAGTAGAAAATTTGGCCACGGACGTCG
AGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGAGGAGGCAAAGTTGGTTGAAAGCCTCGTGGAGCTTGTACATGATGGTAGATGGCGAGGTGATAA
TGGAACGTTCAGACCTGGCTACCATGCACAACTGCAGCGTATATTCGGGTGGAACGAAGAGTATAAGTGCATTGTGGCGAATAAAGAAGTCTACGATGAGTGGGTGAAGT
CCCACTCAGCTGCAAAGGGTCTACTGAACAAGCCATTTCCTCATTACGAGGAACTCACCATCGTGTTCGGCAAAATCGGGCTAGTGGATCGAGGTGTGATGTCCCAGCGG
AATAAGCTGAAGAAAGCCCCTCAGTGGACTTGGAGGGGGATTCCAACTTCCAGGGACATAGGATTATTATATCCCCATCCCTCCAGTAGAAAATTTGGCCACGGACGTCG
AGTTTGA
Protein sequenceShow/hide protein sequence
MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRIFGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGKIGLVDRGVMSQR
NKLKKAPQWTWRGIPTSRDIGLLYPHPSSRKFGHGRRV