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Lag0001229 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001229
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpentatricopeptide repeat-containing protein At3g53700, chloroplastic
Genome locationchr4:27238386..27238760
RNA-Seq ExpressionLag0001229
SyntenyLag0001229
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142210.1 pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Cucumis sativus]1.9e-4389.72Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE DRGIFLIFVESY KFELYDEV+GI  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDVSTF+ILIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQ+R
Subjt:  CKAHQIR

XP_008447642.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Cucumis melo]1.5e-4389.72Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE DRGIFLIFVESY KFELYDEV+GI  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDVSTF+ILIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQ+R
Subjt:  CKAHQIR

XP_022963321.1 pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Cucurbita moschata]2.1e-4287.85Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE+DRGIFLIFVESYA FELYDEV+ I  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDV+TF+ILI AL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQIR
Subjt:  CKAHQIR

XP_022972727.1 pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Cucurbita maxima]2.1e-4287.85Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE+DRGIFLIFVESYA FELYDEV+ I  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDV+TF+ILI AL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQIR
Subjt:  CKAHQIR

XP_038881185.1 pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Benincasa hispida]2.1e-4286.92Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE DRGIFLIFVESYAKFELYDEV+GI  VK +EDEYR+K DTRFYNVLLNVLV+ANKLKLVESAHSSMVRRR RHD+STF+ILIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQ+R
Subjt:  CKAHQIR

TrEMBL top hitse value%identityAlignment
A0A0A0L254 Uncharacterized protein9.3e-4489.72Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE DRGIFLIFVESY KFELYDEV+GI  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDVSTF+ILIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQ+R
Subjt:  CKAHQIR

A0A1S3BHC3 pentatricopeptide repeat-containing protein At3g53700, chloroplastic7.1e-4489.72Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE DRGIFLIFVESY KFELYDEV+GI  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDVSTF+ILIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQ+R
Subjt:  CKAHQIR

A0A5A7SQ06 Pentatricopeptide repeat-containing protein7.1e-4489.72Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE DRGIFLIFVESY KFELYDEV+GI  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDVSTF+ILIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQ+R
Subjt:  CKAHQIR

A0A6J1HFU3 pentatricopeptide repeat-containing protein At3g53700, chloroplastic1.0e-4287.85Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE+DRGIFLIFVESYA FELYDEV+ I  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDV+TF+ILI AL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQIR
Subjt:  CKAHQIR

A0A6J1I5N1 pentatricopeptide repeat-containing protein At3g53700, chloroplastic1.0e-4287.85Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        MR VLEEMKLSGCE+DRGIFLIFVESYA FELYDEV+ I  VKV+EDEYRIK DTRFYNVLLNVLVDANKLKLVESAHSSMVRRR RHDV+TF+ILI AL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        CKAHQIR
Subjt:  CKAHQIR

SwissProt top hitse value%identityAlignment
Q9ASZ8 Pentatricopeptide repeat-containing protein At1g126204.8e-0529.29Show/hide
Query:  HVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKALC
        H+L+ M   GC  +   F I +  Y K  L D+ L + +   +     +  DT  YN L+    +  KL++ +     MV RR R D+ ++ IL+  LC
Subjt:  HVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKALC

Q9LFF1 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic4.2e-2554.21Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        M+ +LE+MK S CE+    FLI +ESYA+FEL DE+L +V   +  DE+ +K DT FYN +LN+LVD N LKLVE +H+ M     + DVSTF++LIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        C+AHQ+R
Subjt:  CKAHQIR

Arabidopsis top hitse value%identityAlignment
AT1G12620.1 Pentatricopeptide repeat (PPR) superfamily protein3.4e-0629.29Show/hide
Query:  HVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKALC
        H+L+ M   GC  +   F I +  Y K  L D+ L + +   +     +  DT  YN L+    +  KL++ +     MV RR R D+ ++ IL+  LC
Subjt:  HVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKALC

AT1G12775.1 Pentatricopeptide repeat (PPR) superfamily protein3.2e-0426.53Show/hide
Query:  VLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKALC
        +++ M   GC+ D   F I +  Y K    D+ L + +   +     +  +T  YN L+     + KL++ +     MV RR R D+ ++ IL+  LC
Subjt:  VLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKALC

AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein3.0e-2654.21Show/hide
Query:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL
        M+ +LE+MK S CE+    FLI +ESYA+FEL DE+L +V   +  DE+ +K DT FYN +LN+LVD N LKLVE +H+ M     + DVSTF++LIKAL
Subjt:  MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKAL

Query:  CKAHQIR
        C+AHQ+R
Subjt:  CKAHQIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCACGTCTTGGAGGAGATGAAGCTCTCCGGTTGCGAGGTCGATAGAGGTATTTTCTTGATTTTTGTTGAGAGCTATGCGAAATTCGAGTTGTATGATGAAGTTTT
GGGCATTGTTAAAGTAAAAGTAATAGAGGATGAATATAGGATAAAGATGGATACCCGTTTCTATAATGTGTTGTTGAATGTTCTTGTGGATGCCAATAAGCTTAAACTTG
TCGAATCTGCGCATTCGAGCATGGTAAGAAGACGAACTAGGCATGATGTTTCGACGTTTGATATTTTGATAAAGGCCCTTTGCAAGGCTCATCAGATTAGAGCCTGCCAT
TTTGATGATGGAAGAGATGCCAAGTTATGGCTTGTCTCCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCACGTCTTGGAGGAGATGAAGCTCTCCGGTTGCGAGGTCGATAGAGGTATTTTCTTGATTTTTGTTGAGAGCTATGCGAAATTCGAGTTGTATGATGAAGTTTT
GGGCATTGTTAAAGTAAAAGTAATAGAGGATGAATATAGGATAAAGATGGATACCCGTTTCTATAATGTGTTGTTGAATGTTCTTGTGGATGCCAATAAGCTTAAACTTG
TCGAATCTGCGCATTCGAGCATGGTAAGAAGACGAACTAGGCATGATGTTTCGACGTTTGATATTTTGATAAAGGCCCTTTGCAAGGCTCATCAGATTAGAGCCTGCCAT
TTTGATGATGGAAGAGATGCCAAGTTATGGCTTGTCTCCATATGA
Protein sequenceShow/hide protein sequence
MRHVLEEMKLSGCEVDRGIFLIFVESYAKFELYDEVLGIVKVKVIEDEYRIKMDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRTRHDVSTFDILIKALCKAHQIRACH
FDDGRDAKLWLVSI